Basic Information
Locus ID:
Sgl08498
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Encoded by
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB1 | 31602867 | 31605167 | - | Sgl08498 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.11 | 51,906.28 Da | 38.03 | 76.10 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04476 | RPA1_DBD_C | 248 | 394 | 9.10998E-18 | IPR013955 |
| CDD | cd04480 | RPA1_DBD_A_like | 14 | 99 | 1.92671E-17 | - |
| Pfam | PF08646 | Replication factor-A C terminal domain | 264 | 373 | 1.4E-7 | IPR013955 |
| Pfam | PF02721 | Domain of unknown function DUF223 | 38 | 116 | 3.0E-6 | IPR003871 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 245 | 396 | 8.05E-20 | IPR012340 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 2 | 106 | 3.56E-11 | IPR012340 |
| Gene3D | G3DSA:2.40.50.140 | - | 1 | 106 | 9.9E-15 | - |
| Gene3D | G3DSA:2.40.50.140 | - | 235 | 396 | 5.8E-22 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 403 | 420 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 421 | 441 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 397 | 451 | - | - |
KEGG Pathway
KO Term:
Pathway:
ko03030 (DNA replication)
map03030 (DNA replication)
ko03420 (Nucleotide excision repair)
map03420 (Nucleotide excision repair)
ko03430 (Mismatch repair)
map03430 (Mismatch repair)
ko03440 (Homologous recombination)
map03440 (Homologous recombination)
ko03460 (Fanconi anemia pathway)
map03460 (Fanconi anemia pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G05642.1 | Nucleic acid-binding, OB-fold-like protein. | 0 |
| RefSeq | XP_048503654.1 | replication factor A protein 1-like isoform X3 [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A0K9RFK3 | DUF223 domain-containing protein (Fragment) OS=Spinacia oleracea OX=3562 GN=SOVF_072520 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology