Basic Information
Locus ID:
Sgl08373
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
gag-polypeptide of LTR copia-type
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB1 | 29544897 | 29550558 | - | Sgl08373 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.54 | 75,546.22 Da | 45.28 | 82.48 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03732 | Retrotransposon gag protein | 119 | 216 | 5.9E-6 | IPR005162 |
| Pfam | PF14244 | gag-polypeptide of LTR copia-type | 40 | 85 | 3.3E-13 | IPR029472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 12 | 29 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 271 | 298 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021864907.1 | uncharacterized protein LOC110803682 [Spinacia oleracea] | 0 |
| TrEMBL | A0A803LQR9 | Integrase catalytic domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg10961 |
| Amaranthaceae | Suaeda glauca | 13 | Sgl03301, Sgl07869, Sgl08373, Sgl10700, Sgl16034, Sgl34010 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.8BG0008630 |