Basic Information
Locus ID:
Sgl08334
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Ribonuclease H protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB1 | 29069429 | 29073531 | - | Sgl08334 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.80 | 123,210.66 Da | 42.13 | 83.97 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06222 | RNase_H_like | 904 | 1025 | 3.63375E-26 | IPR044730 |
| Pfam | PF13966 | zinc-binding in reverse transcriptase | 734 | 796 | 7.8E-12 | IPR026960 |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 291 | 456 | 3.6E-19 | IPR000477 |
| Pfam | PF13456 | Reverse transcriptase-like | 904 | 1027 | 1.1E-19 | IPR002156 |
| SUPERFAMILY | SSF56219 | DNase I-like | 4 | 221 | 5.37E-23 | IPR036691 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 899 | 1028 | 3.49E-9 | IPR012337 |
| Gene3D | G3DSA:3.60.10.10 | Endonuclease/exonuclease/phosphatase | 1 | 221 | 4.1E-24 | IPR036691 |
| Gene3D | G3DSA:3.30.420.10 | - | 900 | 1028 | 5.3E-11 | IPR036397 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10000.1 | Ribonuclease H-like superfamily protein. | 0 |
| RefSeq | XP_048496063.1 | uncharacterized protein LOC125495441 [Beta vulgaris subsp. vulgaris] | 0 |
| P92555 | Uncharacterized mitochondrial protein AtMg01250 OS=Arabidopsis thaliana OX=3702 GN=AtMg01250 PE=4 SV=1 | 0 | |
| TrEMBL | A0A2N9HP80 | Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS41393 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||