Basic Information
Locus ID:
Sgl07969
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB1 | 25204462 | 25205488 | + | Sgl07969 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.16 | 21,479.49 Da | 35.70 | 81.71 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 68 | 181 | 7.16943E-40 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 54 | 180 | 4.8E-34 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 25 | 186 | 1.48E-40 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 31 | 187 | 2.7E-41 | IPR016135 |
| SMART | SM00212 | ubc_7 | 40 | 186 | 9.7E-41 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 37 | 186 | 36.007927 | IPR000608 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G64230.3 | ubiquitin-conjugating enzyme 28. | 0 |
| RefSeq | XP_021749151.1 | ubiquitin-conjugating enzyme E2 28-like [Chenopodium quinoa] | 0 |
| Q9Y2X8 | Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens OX=9606 GN=UBE2D4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LZC4 | UBC core domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23732 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl02848, Sgl07969 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000030517 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0025620, CQ.Regalona.r1.3BG0026540 |