Basic Information
Locus ID:
Sgl07869
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
BEST Arabidopsis thaliana protein match is
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB1 | 24392059 | 24399500 | + | Sgl07869 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.78 | 145,592.61 Da | 41.21 | 82.30 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00665 | Integrase core domain | 611 | 711 | 1.6E-11 | IPR001584 |
| Pfam | PF04862 | Protein of unknown function (DUF642) | 977 | 1133 | 1.3E-60 | IPR006946 |
| Pfam | PF03732 | Retrotransposon gag protein | 96 | 207 | 2.0E-5 | IPR005162 |
| Pfam | PF14244 | gag-polypeptide of LTR copia-type | 31 | 76 | 5.5E-11 | IPR029472 |
| Pfam | PF04862 | Protein of unknown function (DUF642) | 1146 | 1311 | 5.1E-14 | IPR006946 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 976 | 1134 | 1.4E-5 | IPR008979 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 608 | 768 | 6.07E-37 | IPR012337 |
| Gene3D | G3DSA:3.30.420.10 | - | 604 | 783 | 5.0E-37 | IPR036397 |
| ProSiteProfiles | PS50994 | Integrase catalytic domain profile. | 597 | 774 | 19.336199 | IPR001584 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 887 | 909 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 257 | 283 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 874 | 918 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G41810.1 | Protein of unknown function, DUF642. | 0 |
| RefSeq | XP_021863062.1 | uncharacterized protein LOC110801962 [Spinacia oleracea] | 0 |
| O22940 | Protein TEEBE OS=Arabidopsis thaliana OX=3702 GN=TEB PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QBC7 | Uncharacterized protein OS=Spinacia oleracea OX=3562 GN=SOVF_205460 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg10961 |
| Amaranthaceae | Suaeda glauca | 13 | Sgl03301, Sgl07869, Sgl08373, Sgl10700, Sgl16034, Sgl34010 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.8BG0008630 |