Basic Information
Locus ID:
Sgl07309
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
40S ribosomal protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB1 | 20342749 | 20346103 | + | Sgl07309 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.80 | 21,089.44 Da | 32.54 | 98.47 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00338 | Ribosomal protein S10p/S20e | 92 | 186 | 2.4E-27 | IPR027486 |
| SUPERFAMILY | SSF54999 | Ribosomal protein S10 | 90 | 187 | 5.36E-30 | IPR036838 |
| Gene3D | G3DSA:3.30.70.600 | Ribosomal protein S10 domain | 73 | 189 | 4.8E-48 | IPR036838 |
| SMART | SM01403 | Ribosomal_S10_2 | 92 | 186 | 1.1E-38 | IPR027486 |
| TIGRFAM | TIGR01046 | uS10_euk_arch: ribosomal protein uS10 | 89 | 187 | 9.5E-40 | IPR005729 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 125 | 140 | 1.7E-13 | IPR001848 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 90 | 103 | 1.7E-13 | IPR001848 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 147 | 161 | 1.7E-13 | IPR001848 |
| Hamap | MF_00508 | 30S ribosomal protein S10 [rpsJ]. | 88 | 187 | 18.458902 | IPR001848 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G47370.1 | Ribosomal protein S10p/S20e family protein. | 0 |
| RefSeq | XP_010671990.2 | 40S ribosomal protein S20-2 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9STY6 | Small ribosomal subunit protein uS10y OS=Arabidopsis thaliana OX=3702 GN=RPS20B PE=2 SV=1 | 0 | |
| TrEMBL | A0A0J8B5L7 | Ribosomal_S10 domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_012430 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology