halophFGD

Basic Information

Locus ID: Sgl07199

Species & Taxonomic ID: Suaeda glauca & 397272

Genome Assembly: GWHEQCX00000000

Description: E3 ubiquitin-protein ligase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chrB1	19615240	19620628	+	Sgl07199

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
4.83	69,348.53 Da	59.59	73.36	-0.43

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd16623	RING-HC_RBR_TRIAD1_like	162	212	1.64173E-12	-
Pfam	PF01485	IBR domain, a half RING-finger domain	233	292	1.9E-11	IPR002867
SUPERFAMILY	SSF57850	RING/U-box	303	353	3.71E-8	-
SUPERFAMILY	SSF57850	RING/U-box	159	240	3.36E-12	-
SUPERFAMILY	SSF57850	RING/U-box	233	299	3.71E-10	-
Gene3D	G3DSA:1.20.120.1750	-	288	533	1.4E-32	-
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	156	245	7.4E-14	IPR013083
SMART	SM00647	ibrneu5	231	292	2.1E-13	IPR002867
SMART	SM00647	ibrneu5	296	367	0.77	IPR002867
ProSiteProfiles	PS50089	Zinc finger RING-type profile.	162	208	8.579733	IPR001841
ProSiteProfiles	PS51873	TRIAD supradomain profile.	158	371	31.525703	IPR044066

KEGG Pathway

KO Term:

K11968 (ariadne-1 [EC:2.3.2.31])

Best hit

Source	Best Hit ID	Description
TAIR	AT1G65430.1	IBR domain-containing protein.
RefSeq	XP_010693494.2	probable E3 ubiquitin-protein ligase ARI8 [Beta vulgaris subsp. vulgaris]
Swiss-Prot	Q8W468	Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana OX=3702 GN=ARI8 PE=2 SV=1
TrEMBL	A0A0K9QVI1	RBR-type E3 ubiquitin transferase OS=Spinacia oleracea OX=3562 GN=SOVF_141790 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg10971, jg14653, jg5913
Aizoaceae	Mesembryanthemum crystallinum	8	gene_10143, gene_19392, gene_2222, gene_2904, gene_2905 ... gene_3181, gene_3182, gene_3183
Amaranthaceae	Atriplex hortensis	7	Ah000345, Ah000348, Ah008011, Ah018958, Ah018959, Ah019341 ... Ah022503
Amaranthaceae	Beta vulgaris	3	BVRB_3g054880, BVRB_4g074750, BVRB_5g119640
Amaranthaceae	Salicornia bigelovii	5	Sbi_jg15249, Sbi_jg15522, Sbi_jg17415, Sbi_jg56061 ... Sbi_jg62064
Amaranthaceae	Salicornia europaea	3	Seu_jg26546, Seu_jg26791, Seu_jg676
Amaranthaceae	Suaeda aralocaspica	5	GOSA_00004951, GOSA_00004952, GOSA_00006296, GOSA_00006584 ... GOSA_00007560
Amaranthaceae	Suaeda glauca	8	Sgl01713, Sgl02044, Sgl02045, Sgl06867, Sgl07198, Sgl07199 ... Sgl24261, Sgl29436
Amaranthaceae	Chenopodium album	15	gene:ENSEOMG00000003098, gene:ENSEOMG00000004108 ... gene:ENSEOMG00000006541, gene:ENSEOMG00000011635, gene:ENSEOMG00000011688, gene:ENSEOMG00000014193, gene:ENSEOMG00000021251, gene:ENSEOMG00000024753, gene:ENSEOMG00000027283, gene:ENSEOMG00000028844, gene:ENSEOMG00000030735, gene:ENSEOMG00000042603, gene:ENSEOMG00000043076, gene:ENSEOMG00000043537, gene:ENSEOMG00000044964
Amaranthaceae	Chenopodium quinoa	13	CQ.Regalona.r1.3AG0002360, CQ.Regalona.r1.3AG0002370 ... CQ.Regalona.r1.3AG0009570, CQ.Regalona.r1.3BG0002510, CQ.Regalona.r1.3BG0009730, CQ.Regalona.r1.4AG0003030, CQ.Regalona.r1.4BG0003180, CQ.Regalona.r1.5AG0025060, CQ.Regalona.r1.5AG0025070, CQ.Regalona.r1.5BG0026510, CQ.Regalona.r1.5BG0026520, CQ.Regalona.r1.6AG0011570, CQ.Regalona.r1.8AG0012250
Anacardiaceae	Pistacia vera	2	pistato.v30095640, pistato.v30243700
Apiaceae	Apium graveolens	4	Ag1G00025, Ag3G01129, Ag5G00927, Ag7G02495
Arecaceae	Cocos nucifera	3	COCNU_01G015350, COCNU_02G012690, scaffold015887G000050
Arecaceae	Phoenix dactylifera	3	gene-LOC103708603, gene-LOC103716244, gene-LOC103724095
Asparagaceae	Asparagus officinalis	5	AsparagusV1_01.1335.V1.1, AsparagusV1_01.3623.V1.1 ... AsparagusV1_02.475.V1.1, AsparagusV1_04.1972.V1.1, AsparagusV1_09.588.V1.1
Asteraceae	Flaveria trinervia	5	Ftri11G24005, Ftri12G27530, Ftri18G01154, Ftri18G19073 ... Ftri1G00637
Brassicaceae	Arabidopsis thaliana	7	AT1G05880.2, AT1G05890.2, AT1G65430.1, AT2G31510.1 ... AT2G31760.1, AT2G31770.1, AT2G31780.1
Brassicaceae	Eutrema salsugineum	6	Thhalv10007273m.g.v1.0, Thhalv10009394m.g.v1.0 ... Thhalv10015682m.g.v1.0, Thhalv10016456m.g.v1.0, Thhalv10017564m.g.v1.0, Thhalv10018351m.g.v1.0
Brassicaceae	Schrenkiella parvula	7	Sp1g04710.v2.2, Sp1g04720.v2.2, Sp4g13970.v2.2 ... Sp4g14160.v2.2, Sp5g20190.v2.2, Sp6g31880.v2.2, Sp7g00980.v2.2
Brassicaceae	Brassica nigra	12	BniB01g012370.2N, BniB01g012380.2N, BniB01g012640.2N ... BniB03g001580.2N, BniB05g025870.2N, BniB05g061500.2N, BniB06g020580.2N, BniB06g020820.2N, BniB06g044620.2N, BniB08g005350.2N, BniB08g019560.2N, BniB08g019800.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq04G1429, Ceq06G2261
Casuarinaceae	Casuarina glauca	2	Cgl04G1592, Cgl06G2372
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno04g02280, gene.Cymno05g02420
Dunaliellaceae	Dunaliella salina	1	Dusal.0235s00013.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate03g21200
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-11998
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG03.1628, evm.TU.LG11.149
Plantaginaceae	Plantago ovata	6	Pov_00021409, Pov_00029535, Pov_00038885, Pov_00039569 ... Pov_00039570, Pov_00039574
Plumbaginaceae	Limonium bicolor	4	Lb3G15885, Lb4G25112, Lb4G25115, Lb7G33509
Poaceae	Echinochloa crus-galli	14	AH01.4387, AH03.1232, AH04.2135, AH04.2137, AH08.2241 ... AH09.1004, AH09.1399, BH04.2225, BH04.2226, BH08.2371, BH09.1584, CH04.2564, CH08.2547, CH09.1704
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_4AG0312580, gene-QOZ80_4BG0343750 ... gene-QOZ80_6AG0526260, gene-QOZ80_6BG0480180, gene-QOZ80_8AG0638200, gene-QOZ80_8BG0667720
Poaceae	Hordeum vulgare	6	HORVU.MOREX.r3.2HG0177810.1, HORVU.MOREX.r3.5HG0495770.1 ... HORVU.MOREX.r3.5HG0505350.1.CDS1, HORVU.MOREX.r3.5HG0506120.1.CDS1, HORVU.MOREX.r3.6HG0592780.1, HORVU.MOREX.r3.7HG0686010.1
Poaceae	Lolium multiflorum	6	gene-QYE76_006616, gene-QYE76_007060, gene-QYE76_023529 ... gene-QYE76_030416, gene-QYE76_044840, gene-QYE76_049610
Poaceae	Oryza coarctata	8	Oco02G028150, Oco07G009400, Oco08G009250, Oco15G013690 ... Oco16G012870, Oco17G009270, Oco17G011730, Oco18G011640
Poaceae	Oryza sativa	5	LOC_Os01g37970.1, LOC_Os04g41470.1, LOC_Os08g42740.3 ... LOC_Os09g33876.1, LOC_Os09g38630.1
Poaceae	Paspalum vaginatum	7	gene-BS78_02G271100, gene-BS78_05G235300, gene-BS78_K261000 ... gene-BS78_05G236100, gene-BS78_05G236400, gene-BS78_06G144200, gene-BS78_07G210500
Poaceae	Puccinellia tenuiflora	7	Pt_Chr0105319, Pt_Chr0204522, Pt_Chr0204582, Pt_Chr0307171 ... Pt_Chr0403527, Pt_Chr0700145, Pt_Chr0700326
Poaceae	Sporobolus alterniflorus	13	Chr06G002260, Chr11G013140, Chr14G002760, Chr16G018400 ... Chr17G017540, Chr20G002410, Chr21G001930, Chr23G009920, Chr25G009690, Chr26G009830, Chr29G001070, Chr30G009550, Chr30G013930
Poaceae	Thinopyrum elongatum	5	Tel2E01G607700, Tel5E01G475300, Tel5E01G577600 ... Tel6E01G417600, Tel7E01G466200
Poaceae	Triticum dicoccoides	13	gene_TRIDC2AG050640, gene_TRIDC2BG028800 ... gene_TRIDC2BG053830, gene_TRIDC5AG044580, gene_TRIDC5AG052890, gene_TRIDC5BG048430, gene_TRIDC5BG057020, gene_TRIDC6AG033590, gene_TRIDC6BG039830, gene_TRIDC6BG071330, gene_TRIDC6BG071340, gene_TRIDC7AG034970, gene_TRIDC7BG026060
Poaceae	Triticum aestivum	18	TraesCS2A02G349600.1, TraesCS2B02G368000.2 ... TraesCS2D02G348000.2, TraesCS5A02G298200.1, TraesCS5A02G361400.1.cds1, TraesCS5B02G297300.1, TraesCS5B02G364000.1.cds1, TraesCS5D02G305000.1, TraesCS5D02G370300.1.cds1, TraesCS6A02G216900.1, TraesCS6A02G417200.1.cds1, TraesCS6B02G245900.2, TraesCS6B02G472300.1.cds1, TraesCS6D02G198600.5, TraesCS6D02G402400.1.cds1, TraesCS7A02G267200.4, TraesCS7B02G165100.2, TraesCS7D02G267600.2
Poaceae	Zea mays	6	Zm00001eb037260_P005, Zm00001eb078850_P001 ... Zm00001eb115900_P002, Zm00001eb165360_P001, Zm00001eb198350_P001, Zm00001eb425570_P004
Poaceae	Zoysia japonica	4	nbis-gene-17564, nbis-gene-36952, nbis-gene-42758 ... nbis-gene-5122
Poaceae	Zoysia macrostachya	4	Zma_g19963, Zma_g21515, Zma_g23356, Zma_g24463
Portulacaceae	Portulaca oleracea	5	evm.TU.LG07.1492, evm.TU.LG11.1274, evm.TU.LG11.1591 ... evm.TU.LG18.1616, evm.TU.LG20.259
Posidoniaceae	Posidonia oceanica	1	gene.Posoc01g05280
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_11_RagTag.1513 ... evm.TU.Scaffold_12_RagTag.490, evm.TU.Scaffold_6_RagTag.1076, evm.TU.Scaffold_8_RagTag.1050
Rhizophoraceae	Carallia pectinifolia	5	nbisL1-mrna-12804, nbisL1-mrna-15579, nbisL1-mrna-24253 ... nbisL1-mrna-8980, nbisL1-mrna-8983
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-16588, nbisL1-mrna-20493, nbisL1-mrna-6027 ... nbisL1-mrna-7428
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-15412, nbisL1-mrna-22517, nbisL1-mrna-930
Rhizophoraceae	Kandelia candel	5	add.evm.TU.utg000018l.140, add.evm.TU.utg000018l.141 ... add.evm.TU.utg000027l.125, evm.TU.utg000010l.460, evm.TU.utg000011l.685
Rhizophoraceae	Kandelia obovata	3	Maker00003239, Maker00007836, Maker00008651
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-1172, nbisL1-mrna-13614, nbisL1-mrna-19013
Rhizophoraceae	Rhizophora mangle	5	nbisL1-mrna-11388, nbisL1-mrna-11970, nbisL1-mrna-20469 ... nbisL1-mrna-24087, nbisL1-mrna-4169
Salicaceae	Populus euphratica	5	populus_peu06631, populus_peu20515, populus_peu24042 ... populus_peu31934, populus_peu31935
Solanaceae	Lycium barbarum	2	gene-LOC132603247, gene-LOC132615598
Solanaceae	Solanum chilense	2	SOLCI000301500, SOLCI003011700
Solanaceae	Solanum pennellii	2	gene-LOC107004635, gene-LOC107023621
Tamaricaceae	Reaumuria soongarica	3	STRG.10388_chr07_-, STRG.28039_chr04_+, gene_4243
Tamaricaceae	Tamarix chinensis	3	TC02G1580, TC02G3019, TC06G1399
Zosteraceae	Zostera marina	1	Zosma03g21870.v3.1