Basic Information
Locus ID:
Sgl07075
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB1 | 18892747 | 18903989 | + | Sgl07075 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.03 | 186,592.34 Da | 42.67 | 81.09 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01989 | STK_N | 848 | 1011 | 7.29633E-29 | - |
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 764 | 804 | 2.24217E-20 | - |
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 1635 | 1675 | 4.95468E-21 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 479 | 732 | 1.3E-37 | IPR001245 |
| Pfam | PF04564 | U-box domain | 1632 | 1699 | 5.8E-16 | IPR003613 |
| Pfam | PF00069 | Protein kinase domain | 1347 | 1582 | 7.2E-39 | IPR000719 |
| Pfam | PF04564 | U-box domain | 761 | 825 | 1.7E-14 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1619 | 1699 | 1.15E-22 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 456 | 733 | 1.89E-62 | IPR011009 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1327 | 1604 | 1.48E-63 | IPR011009 |
| SUPERFAMILY | SSF57850 | RING/U-box | 748 | 826 | 1.15E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1631 | 1700 | 6.7E-24 | IPR013083 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 439 | 546 | 2.4E-19 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 547 | 759 | 9.2E-45 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1418 | 1630 | 9.1E-46 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1318 | 1417 | 1.4E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 760 | 829 | 6.8E-25 | IPR013083 |
| SMART | SM00220 | serkin_6 | 1345 | 1607 | 3.5E-27 | IPR000719 |
| SMART | SM00504 | Ubox_2 | 763 | 825 | 6.0E-24 | IPR003613 |
| SMART | SM00504 | Ubox_2 | 1634 | 1696 | 7.3E-22 | IPR003613 |
| SMART | SM00220 | serkin_6 | 474 | 739 | 1.5E-24 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1345 | 1635 | 34.039631 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 474 | 766 | 33.007851 | IPR000719 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 759 | 832 | 26.052353 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 1630 | 1700 | 27.078453 | IPR003613 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 480 | 501 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 592 | 604 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 1351 | 1372 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1463 | 1475 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1105 | 1126 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 151 | 171 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1029 | 1085 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 69 | 103 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1111 | 1126 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 69 | 89 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1029 | 1093 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1281 | 1315 | - | - |
| Coils | Coil | Coil | 1610 | 1630 | - | - |
| Coils | Coil | Coil | 377 | 408 | - | - |
| Coils | Coil | Coil | 1264 | 1287 | - | - |
| Coils | Coil | Coil | 1233 | 1253 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25160.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_019103851.2 | U-box domain-containing protein 35 isoform X2 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9SW11 | U-box domain-containing protein 35 OS=Arabidopsis thaliana OX=3702 GN=PUB35 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803M074 | RING-type E3 ubiquitin transferase OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah018816 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg15369 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl01894, Sgl01917, Sgl07075 |