HalophFGD

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Basic Information
Locus ID: Sgl07075
Species & Taxonomic ID: Suaeda glauca & 397272
Genome Assembly: GWHEQCX00000000
Description: U-box domain-containing protein
Maps and Mapping Data
Chromosome Start End Strand ID
chrB1 18892747 18903989 + Sgl07075
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
7.03 186,592.34 Da 42.67 81.09 -0.41
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
CDD cd01989 STK_N 848 1011 7.29633E-29 -
CDD cd16655 RING-Ubox_WDSUB1_like 764 804 2.24217E-20 -
CDD cd16655 RING-Ubox_WDSUB1_like 1635 1675 4.95468E-21 -
Pfam PF07714 Protein tyrosine and serine/threonine kinase 479 732 1.3E-37 IPR001245
Pfam PF04564 U-box domain 1632 1699 5.8E-16 IPR003613
Pfam PF00069 Protein kinase domain 1347 1582 7.2E-39 IPR000719
Pfam PF04564 U-box domain 761 825 1.7E-14 IPR003613
SUPERFAMILY SSF57850 RING/U-box 1619 1699 1.15E-22 -
SUPERFAMILY SSF56112 Protein kinase-like (PK-like) 456 733 1.89E-62 IPR011009
SUPERFAMILY SSF56112 Protein kinase-like (PK-like) 1327 1604 1.48E-63 IPR011009
SUPERFAMILY SSF57850 RING/U-box 748 826 1.15E-22 -
Gene3D G3DSA:3.30.40.10 Zinc/RING finger domain, C3HC4 (zinc finger) 1631 1700 6.7E-24 IPR013083
Gene3D G3DSA:3.30.200.20 Phosphorylase Kinase; domain 1 439 546 2.4E-19 -
Gene3D G3DSA:1.10.510.10 Transferase(Phosphotransferase) domain 1 547 759 9.2E-45 -
Gene3D G3DSA:1.10.510.10 Transferase(Phosphotransferase) domain 1 1418 1630 9.1E-46 -
Gene3D G3DSA:3.30.200.20 Phosphorylase Kinase; domain 1 1318 1417 1.4E-21 -
Gene3D G3DSA:3.30.40.10 Zinc/RING finger domain, C3HC4 (zinc finger) 760 829 6.8E-25 IPR013083
SMART SM00220 serkin_6 1345 1607 3.5E-27 IPR000719
SMART SM00504 Ubox_2 763 825 6.0E-24 IPR003613
SMART SM00504 Ubox_2 1634 1696 7.3E-22 IPR003613
SMART SM00220 serkin_6 474 739 1.5E-24 IPR000719
ProSiteProfiles PS50011 Protein kinase domain profile. 1345 1635 34.039631 IPR000719
ProSiteProfiles PS50011 Protein kinase domain profile. 474 766 33.007851 IPR000719
ProSiteProfiles PS51698 U-box domain profile. 759 832 26.052353 IPR003613
ProSiteProfiles PS51698 U-box domain profile. 1630 1700 27.078453 IPR003613
ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 480 501 - IPR017441
ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 592 604 - IPR008271
ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 1351 1372 - IPR017441
ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 1463 1475 - IPR008271
MobiDBLite mobidb-lite consensus disorder prediction 1105 1126 - -
MobiDBLite mobidb-lite consensus disorder prediction 151 171 - -
MobiDBLite mobidb-lite consensus disorder prediction 1029 1085 - -
MobiDBLite mobidb-lite consensus disorder prediction 69 103 - -
MobiDBLite mobidb-lite consensus disorder prediction 1111 1126 - -
MobiDBLite mobidb-lite consensus disorder prediction 69 89 - -
MobiDBLite mobidb-lite consensus disorder prediction 1029 1093 - -
MobiDBLite mobidb-lite consensus disorder prediction 1281 1315 - -
Coils Coil Coil 1610 1630 - -
Coils Coil Coil 377 408 - -
Coils Coil Coil 1264 1287 - -
Coils Coil Coil 1233 1253 - -
Gene Ontology
Biological Process:
GO:0006468 (protein phosphorylation) GO:0016567 (protein ubiquitination)
Molecular Function:
GO:0004672 (protein kinase activity) GO:0004842 (ubiquitin-protein transferase activity) GO:0005524 (ATP binding)
KEGG Pathway
KO Term:
K04730 (interleukin-1 receptor-associated kinase 1 [EC:2.7.11.1])
Pathway:
ko04010 (MAPK signaling pathway) map04010 (MAPK signaling pathway) map04064 (NF-kappa B signaling pathway) map04620 (Toll-like receptor signaling pathway) ko04624 (Toll and Imd signaling pathway) map04624 (Toll and Imd signaling pathway)
Best hit
Source Best Hit ID Description E-value
TAIR AT4G25160.1 U-box domain-containing protein kinase family protein. 0
RefSeq XP_019103851.2 U-box domain-containing protein 35 isoform X2 [Beta vulgaris subsp. vulgaris] 0
Swiss-Prot Q9SW11 U-box domain-containing protein 35 OS=Arabidopsis thaliana OX=3702 GN=PUB35 PE=2 SV=2 0
TrEMBL A0A803M074 RING-type E3 ubiquitin transferase OS=Chenopodium quinoa OX=63459 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Amaranthaceae Atriplex hortensis 1 Ah018816
Amaranthaceae Salicornia europaea 1 Seu_jg15369
Amaranthaceae Suaeda glauca 3 Sgl01894, Sgl01917, Sgl07075
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.