Basic Information
Locus ID:
Sgl07025
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Short Name:
SSI2
Description:
Introduction of a cis double bond between carbons of the acyl chain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB1 | 18585960 | 18597735 | - | Sgl07025 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.66 | 122,178.12 Da | 37.59 | 77.76 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01050 | Acyl_ACP_Desat | 401 | 707 | 1.21637E-168 | IPR005067 |
| CDD | cd01050 | Acyl_ACP_Desat | 68 | 359 | 1.7399E-171 | IPR005067 |
| CDD | cd01050 | Acyl_ACP_Desat | 746 | 1042 | 8.68651E-173 | IPR005067 |
| Pfam | PF03405 | Fatty acid desaturase | 746 | 1066 | 1.7E-157 | IPR005067 |
| Pfam | PF03405 | Fatty acid desaturase | 401 | 714 | 4.4E-148 | IPR005067 |
| Pfam | PF03405 | Fatty acid desaturase | 68 | 359 | 4.9E-147 | IPR005067 |
| SUPERFAMILY | SSF47240 | Ferritin-like | 744 | 1072 | 3.06E-125 | IPR009078 |
| SUPERFAMILY | SSF47240 | Ferritin-like | 393 | 712 | 1.39E-118 | IPR009078 |
| SUPERFAMILY | SSF47240 | Ferritin-like | 54 | 359 | 3.82E-118 | IPR009078 |
| Gene3D | G3DSA:1.10.620.20 | Ribonucleotide Reductase, subunit A | 385 | 720 | 3.2E-158 | IPR012348 |
| Gene3D | G3DSA:1.10.620.20 | Ribonucleotide Reductase, subunit A | 729 | 1073 | 1.4E-171 | IPR012348 |
| Gene3D | G3DSA:1.10.620.20 | Ribonucleotide Reductase, subunit A | 51 | 362 | 2.0E-158 | IPR012348 |
| ProSitePatterns | PS00574 | Fatty acid desaturases family 2 signature. | 316 | 335 | - | IPR005803 |
| ProSitePatterns | PS00574 | Fatty acid desaturases family 2 signature. | 993 | 1012 | - | IPR005803 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Reaction:
R03370 (Octadecanoyl-[acyl-carrier protein] + 2 Reduced ferredoxin + Oxygen + 2 H+ <=> Oleoyl-[acyl-carrier protein] + 2 Oxidized ferredoxin + 2 H2O)
R08161 (Hexadecanoyl-[acp] + 2 Reduced ferredoxin + Oxygen + 2 H+ <=> Hexadecenoyl-[acyl-carrier protein] + 2 Oxidized ferredoxin + 2 H2O)
R11108 (Hexadecanoyl-[acp] + 2 Reduced ferredoxin + Oxygen + 2 H+ <=> (4Z)-Hexadec-4-enoyl-[acyl-carrier protein] + 2 Oxidized ferredoxin + 2 H2O)
R11109 (Hexadecanoyl-[acp] + 2 Reduced ferredoxin + Oxygen + 2 H+ <=> (6Z)-Hexadec-6-enoyl-[acyl-carrier protein] + 2 Oxidized ferredoxin + 2 H2O)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G43710.1 | Plant stearoyl-acyl-carrier-protein desaturase family protein. Encodes a stearoyl-ACP desaturase, involved in fatty acid desaturation. The ssi2 mutants have increased 18:0 and reduced 18:1 fatty acids. Exogenous application of glycerol to wild type plants mimics the ssi2 mutant phenotype. The altered 18:1 fatty acid content in the ssi2 mutants has an impact on SA- and JA-mediated defense signaling. ssi2 mutants resulted in hyper-resistance to green peach aphid and antibiosis activity in petiole exudates. | 0 |
| RefSeq | XP_021774819.1 | stearoyl-[acyl-carrier-protein] 9-desaturase, chloroplastic-like [Chenopodium quinoa] | 0 |
| P28645 | Stearoyl-[acyl-carrier-protein] 9-desaturase, chloroplastic OS=Spinacia oleracea OX=3562 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7J6G7D2 | Acyl-[acyl-carrier-protein] desaturase OS=Cannabis sativa OX=3483 GN=F8388_021992 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Suaeda glauca | 1 | Sgl07025 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30080760 |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq07G0313, Ceq07G0315 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl07G0319, Cgl07G0321, Cgl07G0322 |