Basic Information
Locus ID:
Sgl06916
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
F-Box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB1 | 17886587 | 17887774 | - | Sgl06916 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.40 | 45,833.81 Da | 52.88 | 82.56 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 13 | 45 | 1.8E-9 | IPR001810 |
| Pfam | PF07734 | F-box associated | 236 | 312 | 2.6E-5 | IPR006527 |
| SUPERFAMILY | SSF81383 | F-box domain | 8 | 48 | 4.45E-9 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 5 | 51 | 6.0E-8 | - |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 123 | 313 | 2.2E-21 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 8 | 53 | 9.047065 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G07870.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_021774926.1 | F-box protein At3g07870-like isoform X2 [Chenopodium quinoa] | 0 |
| Q9SFC7 | F-box protein At3g07870 OS=Arabidopsis thaliana OX=3702 GN=At3g07870 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803KTG3 | F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 3 | gene_20658, gene_2081, gene_2082 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah019416, Ah019422, Ah022664 |
| Amaranthaceae | Beta vulgaris | 3 | BVRB_3g057410, BVRB_3g057420, BVRB_3g057440 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg25994 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg18863 |
| Amaranthaceae | Suaeda aralocaspica | 4 | GOSA_00006329, GOSA_00006330, GOSA_00024058, GOSA_00024059 |
| Amaranthaceae | Suaeda glauca | 15 | Sgl01754, Sgl01755, Sgl01758, Sgl06912, Sgl06913, Sgl06914 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0010010, CQ.Regalona.r1.3BG0010170 |
| Salicaceae | Populus euphratica | 1 | populus_peu00550 |