Basic Information
Locus ID:
Sgl06867
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB1 | 17580018 | 17588425 | + | Sgl06867 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.14 | 67,802.88 Da | 50.80 | 64.14 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16623 | RING-HC_RBR_TRIAD1_like | 141 | 191 | 1.95785E-15 | - |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 289 | 337 | 1.2E-9 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 210 | 272 | 2.8E-14 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 291 | 339 | 1.54E-17 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 210 | 279 | 7.65E-12 | - |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 571 | 596 | 5.1E-5 | IPR036443 |
| SUPERFAMILY | SSF57850 | RING/U-box | 136 | 219 | 8.03E-18 | - |
| Gene3D | G3DSA:2.30.30.380 | - | 568 | 596 | 2.7E-5 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 268 | 527 | 1.4E-83 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 134 | 225 | 1.2E-17 | IPR013083 |
| SMART | SM00547 | zf_4 | 571 | 595 | 0.0013 | IPR001876 |
| SMART | SM00647 | ibrneu5 | 210 | 272 | 4.1E-21 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 285 | 346 | 0.074 | IPR002867 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 569 | 596 | 8.546706 | IPR001876 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 137 | 350 | 50.758392 | IPR044066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 141 | 185 | 8.683004 | IPR001841 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 259 | 273 | 8.531888 | IPR001878 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 573 | 592 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 47 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 538 | 561 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 47 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G31510.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_010671821.1 | probable E3 ubiquitin-protein ligase ARI7 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q84RR0 | Probable E3 ubiquitin-protein ligase ARI7 OS=Arabidopsis thaliana OX=3702 GN=ARI7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C9A7G8 | RBR-type E3 ubiquitin transferase OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology