Basic Information
Locus ID:
Sgl06767
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
DEAD-box ATP-dependent RNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB1 | 16848391 | 16858261 | + | Sgl06767 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.92 | 123,639.82 Da | 67.44 | 53.32 | -0.91 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00201 | WW | 23 | 52 | 1.6762E-4 | IPR001202 |
| CDD | cd18787 | SF2_C_DEAD | 672 | 801 | 4.52472E-62 | - |
| Pfam | PF00397 | WW domain | 22 | 52 | 3.2E-6 | IPR001202 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 477 | 647 | 2.4E-49 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 684 | 792 | 1.1E-31 | IPR001650 |
| SUPERFAMILY | SSF51045 | WW domain | 14 | 53 | 7.7E-8 | IPR036020 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 525 | 807 | 1.26E-75 | IPR027417 |
| Gene3D | G3DSA:2.20.70.10 | - | 16 | 56 | 5.6E-6 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 427 | 661 | 1.0E-89 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 662 | 833 | 5.3E-59 | IPR027417 |
| SMART | SM00490 | helicmild6 | 712 | 792 | 1.5E-33 | IPR001650 |
| SMART | SM00487 | ultradead3 | 472 | 675 | 4.8E-65 | IPR014001 |
| SMART | SM00456 | ww_5 | 21 | 54 | 3.2E-7 | IPR001202 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 20 | 54 | 11.349 | IPR001202 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 687 | 831 | 25.223057 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 484 | 658 | 31.062593 | IPR014001 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 453 | 481 | 11.400525 | IPR014014 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 26 | 52 | - | IPR001202 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 604 | 612 | - | IPR000629 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 217 | 237 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1081 | 1108 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 849 | 1133 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 98 | 120 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1052 | 1080 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1001 | 1016 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 66 | 85 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 98 | 122 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 956 | 1000 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 134 | 196 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1017 | 1051 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 914 | 929 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06480.1 | DEAD box RNA helicase family protein. | 0 |
| RefSeq | XP_021757000.1 | DEAD-box ATP-dependent RNA helicase 40-like [Chenopodium quinoa] | 0 |
| Q9SQV1 | DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana OX=3702 GN=RH40 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QDW2 | DEAD-box ATP-dependent RNA helicase 40 OS=Spinacia oleracea OX=3562 GN=SOVF_190160 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology