Basic Information
Locus ID:
Sgl06705
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB1 | 16233376 | 16240320 | - | Sgl06705 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.89 | 45,787.46 Da | 56.65 | 59.53 | -0.69 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16789 | mRING-HC-C3HC5_MGRN1_like---blasttree | 350 | 390 | 2.74847E-27 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 349 | 395 | 1.3E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 350 | 396 | 8.72E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 335 | 400 | 9.6E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 351 | 389 | 5.7E-4 | IPR001841 |
| PIRSF | PIRSF036836 | SBP1_RNase_bind | 52 | 157 | 45.0 | IPR017066 |
| PIRSF | PIRSF036836 | SBP1_RNase_bind | 327 | 402 | 5.6E-9 | IPR017066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 351 | 390 | 11.382803 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 11 | 26 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06140.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021757089.1 | probable E3 ubiquitin-protein ligase LUL3 [Chenopodium quinoa] | 0 |
| Q8LA32 | Probable E3 ubiquitin-protein ligase LUL4 OS=Arabidopsis thaliana OX=3702 GN=LUL4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7J7GP19 | RING-type E3 ubiquitin transferase OS=Camellia sinensis OX=4442 GN=HYC85_019303 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology