Basic Information
Locus ID:
Sgl06462
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB1 | 14256569 | 14258256 | + | Sgl06462 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.83 | 40,060.26 Da | 37.03 | 80.22 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 19 | 74 | 2.6E-12 | IPR025287 |
| Pfam | PF14380 | Wall-associated receptor kinase C-terminal | 137 | 212 | 2.8E-8 | IPR032872 |
| Pfam | PF13639 | Ring finger domain | 302 | 345 | 3.4E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 295 | 350 | 7.07E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 266 | 349 | 7.7E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 303 | 344 | 1.8E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 303 | 345 | 12.651561 | IPR001841 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G53110.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021729059.1 | putative RING-H2 finger protein ATL21A [Chenopodium quinoa] | 0 |
| P0CH01 | Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana OX=3702 GN=ATL21A PE=3 SV=1 | 0 | |
| TrEMBL | A0A803L2P0 | RING-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology