halophFGD

Basic Information

Locus ID: Sgl06455

Species & Taxonomic ID: Suaeda glauca & 397272

Genome Assembly: GWHEQCX00000000

Description: ribonuclease H protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chrB1	14195626	14203984	+	Sgl06455

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.12	96,905.38 Da	46.32	78.86	-0.36

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd16454	RING-H2_PA-TM-RING	800	843	1.23849E-16	-
Pfam	PF13639	Ring finger domain	799	843	3.9E-12	IPR001841
Pfam	PF13947	Wall-associated receptor kinase galacturonan-binding	410	475	2.9E-9	IPR025287
SUPERFAMILY	SSF57850	RING/U-box	795	847	1.61E-19	-
SUPERFAMILY	SSF56219	DNase I-like	8	195	1.11E-26	IPR036691
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	758	847	1.2E-20	IPR013083
Gene3D	G3DSA:3.60.10.10	Endonuclease/exonuclease/phosphatase	2	194	9.1E-21	IPR036691
SMART	SM00184	ring_2	801	842	4.3E-7	IPR001841
ProSiteProfiles	PS50089	Zinc finger RING-type profile.	801	843	12.489278	IPR001841
Coils	Coil	Coil	255	275	-	-

Gene Ontology

Molecular Function:

GO:0030247 (polysaccharide binding)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT5G53110.1	RING/U-box superfamily protein.	0
RefSeq	XP_021742793.1	uncharacterized protein LOC110708878 [Chenopodium quinoa]	0
Swiss-Prot	Q8RX29	RING-H2 finger protein ATL70 OS=Arabidopsis thaliana OX=3702 GN=ATL70 PE=2 SV=1	0
TrEMBL	F4NCJ6	Reverse transcriptase domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Suaeda glauca	4	Sgl01446, Sgl06455, Sgl06537, Sgl61473