Basic Information
Locus ID:
Sgl06451
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
beta-amylase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB1 | 14160899 | 14168881 | + | Sgl06451 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.97 | 115,103.08 Da | 44.99 | 76.12 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 963 | 1011 | 3.4E-11 | IPR001841 |
| Pfam | PF01373 | Glycosyl hydrolase family 14 | 105 | 528 | 8.3E-120 | IPR001554 |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 610 | 679 | 7.4E-15 | IPR025287 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 99 | 576 | 1.66E-191 | IPR017853 |
| SUPERFAMILY | SSF57850 | RING/U-box | 960 | 1015 | 1.85E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 941 | 1017 | 4.5E-18 | IPR013083 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 92 | 590 | 2.8E-226 | - |
| SMART | SM00184 | ring_2 | 965 | 1010 | 8.0E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 965 | 1011 | 12.459772 | IPR001841 |
| ProSitePatterns | PS00679 | Beta-amylase active site 2. | 272 | 282 | - | IPR018238 |
| PRINTS | PR00750 | Beta-amylase (glycosyl hydrolase family 14) signature | 157 | 175 | 3.4E-84 | IPR001554 |
| PRINTS | PR00750 | Beta-amylase (glycosyl hydrolase family 14) signature | 179 | 200 | 3.4E-84 | IPR001554 |
| PRINTS | PR00750 | Beta-amylase (glycosyl hydrolase family 14) signature | 136 | 150 | 3.4E-84 | IPR001554 |
| PRINTS | PR00750 | Beta-amylase (glycosyl hydrolase family 14) signature | 397 | 408 | 3.4E-84 | IPR001554 |
| PRINTS | PR00842 | Plant beta-amylase signature | 418 | 428 | 4.4E-32 | IPR001371 |
| PRINTS | PR00750 | Beta-amylase (glycosyl hydrolase family 14) signature | 453 | 475 | 3.4E-84 | IPR001554 |
| PRINTS | PR00750 | Beta-amylase (glycosyl hydrolase family 14) signature | 380 | 396 | 3.4E-84 | IPR001554 |
| PRINTS | PR00842 | Plant beta-amylase signature | 475 | 484 | 4.4E-32 | IPR001371 |
| PRINTS | PR00842 | Plant beta-amylase signature | 262 | 271 | 4.4E-32 | IPR001371 |
| PRINTS | PR00842 | Plant beta-amylase signature | 490 | 506 | 4.4E-32 | IPR001371 |
| PRINTS | PR00842 | Plant beta-amylase signature | 461 | 470 | 4.4E-32 | IPR001371 |
| PRINTS | PR00842 | Plant beta-amylase signature | 508 | 522 | 4.4E-32 | IPR001371 |
| PRINTS | PR00750 | Beta-amylase (glycosyl hydrolase family 14) signature | 344 | 363 | 3.4E-84 | IPR001554 |
| PRINTS | PR00750 | Beta-amylase (glycosyl hydrolase family 14) signature | 272 | 294 | 3.4E-84 | IPR001554 |
| PRINTS | PR00750 | Beta-amylase (glycosyl hydrolase family 14) signature | 415 | 438 | 3.4E-84 | IPR001554 |
| PRINTS | PR00842 | Plant beta-amylase signature | 523 | 537 | 4.4E-32 | IPR001371 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G15210.1 | beta-amylase 5. cytosolic beta-amylase expressed in rosette leaves and inducible by sugar. RAM1 mutants have reduced beta amylase in leaves and stems. | 0 |
| RefSeq | XP_010688831.2 | beta-amylase [Beta vulgaris subsp. vulgaris] | 0 |
| P10538 | Beta-amylase OS=Glycine max OX=3847 GN=BMY1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A0K9REX2 | Beta-amylase OS=Spinacia oleracea OX=3562 GN=SOVF_074390 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology