Basic Information
Locus ID:
Sgl06411
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB1 | 13831802 | 13838427 | + | Sgl06411 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.43 | 36,430.08 Da | 45.98 | 72.30 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03829 | Sina | 170 | 298 | 2.65755E-67 | - |
| CDD | cd16571 | RING-HC_SIAHs | 54 | 92 | 3.97388E-14 | - |
| Pfam | PF03145 | Seven in absentia protein family | 98 | 297 | 1.3E-79 | IPR018121 |
| SUPERFAMILY | SSF57850 | RING/U-box | 49 | 96 | 9.13E-6 | - |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 109 | 301 | 4.97E-49 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 163 | 297 | 8.5E-38 | IPR008974 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 12 | 108 | 6.9E-7 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 109 | 162 | 1.6E-17 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 56 | 92 | 9.405901 | IPR001841 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 109 | 169 | 14.134315 | IPR013010 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61790.1 | Protein with RING/U-box and TRAF-like domains. | 0 |
| RefSeq | XP_010671441.1 | E3 ubiquitin-protein ligase SINAT5 [Beta vulgaris subsp. vulgaris] | 0 |
| Q84JL3 | E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis thaliana OX=3702 GN=SINAT3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J5BA72 | RING-type E3 ubiquitin transferase OS=Nyssa sinensis OX=561372 GN=F0562_026735 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology