Basic Information
Locus ID:
Sgl06195
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB1 | 12374259 | 12382041 | + | Sgl06195 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.43 | 96,619.48 Da | 48.44 | 77.25 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 389 | 445 | 4.02502E-30 | - |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 391 | 445 | 1.7E-9 | IPR023780 |
| Pfam | PF01426 | BAH domain | 129 | 237 | 6.7E-11 | IPR001025 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 456 | 813 | 3.2E-37 | IPR001525 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 279 | 813 | 3.93E-79 | IPR029063 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 386 | 449 | 5.33E-13 | IPR016197 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 281 | 830 | 1.3E-232 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 62 | 227 | 1.2E-46 | IPR043151 |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 608 | 779 | 1.3E-232 | - |
| SMART | SM00439 | BAH_4 | 125 | 242 | 6.9E-17 | IPR001025 |
| SMART | SM00298 | chromo_7 | 389 | 448 | 8.8E-10 | IPR000953 |
| TIGRFAM | TIGR00675 | dcm: DNA (cytosine-5-)-methyltransferase | 457 | 810 | 3.6E-30 | IPR001525 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 390 | 446 | 11.616301 | IPR000953 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 279 | 820 | 48.847229 | IPR001525 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 125 | 242 | 17.840076 | IPR001025 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 460 | 472 | - | IPR018117 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 413 | 433 | - | IPR023779 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 280 | 296 | 5.6E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 549 | 562 | 5.6E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 503 | 517 | 5.6E-12 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 56 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 360 | 388 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 12 | 56 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19020.2 | - | 0 |
| RefSeq | XP_021762079.1 | DNA (cytosine-5)-methyltransferase CMT2-like isoform X2 [Chenopodium quinoa] | 0 |
| Q94F87 | DNA (cytosine-5)-methyltransferase CMT2 OS=Arabidopsis thaliana OX=3702 GN=CMT2 PE=2 SV=3 | 0 | |
| TrEMBL | A0A803L224 | Cytosine-specific methyltransferase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology