Basic Information
Locus ID:
Sgl06162
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
nucleic acid binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB1 | 12165831 | 12170033 | + | Sgl06162 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.87 | 28,046.03 Da | 40.64 | 69.89 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12269 | RRM_Vip1_like | 6 | 74 | 4.11015E-32 | IPR034360 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 8 | 66 | 2.8E-7 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 4 | 82 | 7.87E-13 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 3 | 109 | 1.3E-9 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 5 | 74 | 2.6E-6 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 4 | 78 | 11.332346 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 248 | 264 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 85 | 104 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 226 | 245 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 224 | 264 | - | - |
| Coils | Coil | Coil | 221 | 242 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17720.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_021752053.1 | binding partner of ACD11 1-like [Chenopodium quinoa] | 0 |
| Q9LFD5 | Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803KSR6 | RRM domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology