Basic Information
Locus ID:
Sgl05219
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
gag-polypeptide of LTR copia-type
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB1 | 2242814 | 2249860 | - | Sgl05219 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.17 | 66,404.70 Da | 50.31 | 66.25 | -0.94 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14223 | gag-polypeptide of LTR copia-type | 48 | 186 | 8.1E-24 | - |
| Pfam | PF00098 | Zinc knuckle | 258 | 273 | 1.9E-4 | IPR001878 |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 240 | 280 | 1.7E-6 | IPR036875 |
| Gene3D | G3DSA:4.10.60.10 | - | 253 | 297 | 2.9E-6 | - |
| SMART | SM00343 | c2hcfinal6 | 258 | 274 | 0.0029 | IPR001878 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 259 | 273 | 9.48789 | IPR001878 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 487 | 545 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 520 | 545 | - | - |
| Coils | Coil | Coil | 482 | 502 | - | - |
| Coils | Coil | Coil | 411 | 463 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_027773805.1 | LOW QUALITY PROTEIN: uncharacterized protein LOC107021003 [Solanum pennellii] | 0 |
| TrEMBL | A0A803LPK9 | CCHC-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Suaeda glauca | 28 | Sgl00169, Sgl03111, Sgl03123, Sgl05219, Sgl08211, Sgl10299 ... |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC120106406 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132613087 |