halophFGD

Basic Information

Locus ID: Sgl05190

Species & Taxonomic ID: Suaeda glauca & 397272

Genome Assembly: GWHEQCX00000000

Description: Retroviral aspartyl protease

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chrB1	1683610	1696911	+	Sgl05190

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.07	122,541.53 Da	36.55	66.65	-0.73

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd09274	RNase_HI_RT_Ty3	757	870	7.22013E-51	-
Pfam	PF03732	Retrotransposon gag protein	152	225	1.6E-6	IPR005162
Pfam	PF08284	Retroviral aspartyl protease	439	469	5.6E-7	-
Pfam	PF17921	Integrase zinc binding domain	929	984	1.7E-12	IPR041588
Pfam	PF17917	RNase H-like domain found in reverse transcriptase	752	849	7.8E-29	IPR041373
SUPERFAMILY	SSF53098	Ribonuclease H-like	999	1065	2.66E-9	IPR012337
SUPERFAMILY	SSF56672	DNA/RNA polymerases	664	855	1.63E-65	IPR043502
Gene3D	G3DSA:2.40.70.10	Acid Proteases	390	476	5.5E-6	IPR021109
Gene3D	G3DSA:3.30.420.10	-	992	1069	6.8E-7	IPR036397
Gene3D	G3DSA:3.30.70.270	-	672	759	2.8E-31	IPR043128
Gene3D	G3DSA:1.10.340.70	-	890	984	4.7E-15	-
MobiDBLite	mobidb-lite	consensus disorder prediction	272	289	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	267	289	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	121	144	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	381	418	-	-

Gene Ontology

Molecular Function:

GO:0003676 (nucleic acid binding)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT4G24810.5	-	0
RefSeq	XP_021738194.1	uncharacterized protein LOC110704684 [Chenopodium quinoa]	0
Swiss-Prot	Q9UR07	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1	0
TrEMBL	A2I5E5	RNA-directed DNA polymerase OS=Beta vulgaris OX=161934 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Suaeda glauca	144	Sgl00054, Sgl00059, Sgl00122, Sgl00123, Sgl00785, Sgl03218 ... Sgl03679, Sgl03687, Sgl03723, Sgl03991, Sgl03993, Sgl04037, Sgl04361, Sgl04545, Sgl04569, Sgl04770, Sgl04822, Sgl04824, Sgl04939, Sgl05054, Sgl05127, Sgl05190, Sgl05796, Sgl08539, Sgl08580, Sgl08790, Sgl08798, Sgl08830, Sgl09430, Sgl09591, Sgl09616, Sgl09814, Sgl09873, Sgl10006, Sgl10108, Sgl13177, Sgl13755, Sgl14041, Sgl14184, Sgl18330, Sgl18480, Sgl19162, Sgl19200, Sgl19418, Sgl19458, Sgl19545, Sgl20479, Sgl20541, Sgl20748, Sgl21403, Sgl21838, Sgl22031, Sgl25859, Sgl25920, Sgl26130, Sgl26728, Sgl27312, Sgl30940, Sgl31162, Sgl32072, Sgl32092, Sgl32156, Sgl32313, Sgl32394, Sgl32643, Sgl32876, Sgl32884, Sgl36504, Sgl36546, Sgl37358, Sgl37387, Sgl37610, Sgl37693, Sgl37935, Sgl38147, Sgl43535, Sgl44020, Sgl44110, Sgl44120, Sgl44521, Sgl44576, Sgl44829, Sgl45070, Sgl46105, Sgl47766, Sgl48331, Sgl48789, Sgl48877, Sgl49024, Sgl49287, Sgl49294, Sgl49339, Sgl49591, Sgl49839, Sgl50799, Sgl52998, Sgl53097, Sgl53337, Sgl53592, Sgl53793, Sgl53890, Sgl58273, Sgl58399, Sgl58853, Sgl58868, Sgl59058, Sgl59221, Sgl64584, Sgl65072, Sgl65136, Sgl65556, Sgl69033, Sgl69559, Sgl69651, Sgl69879, Sgl71961, Sgl71964, Sgl72009, Sgl72023, Sgl72113, Sgl72177, Sgl72187, Sgl72319, Sgl74411, Sgl75527, Sgl75571, Sgl75720, Sgl75740, Sgl75751, Sgl77963, Sgl78783, Sgl78923, Sgl79041, Sgl79422, Sgl79476, Sgl79562, Sgl79692, Sgl79825, Sgl81252, Sgl81496, Sgl81889, Sgl81952, Sgl82030, Sgl82151