halophFGD

Basic Information

Locus ID: Sgl04939

Species & Taxonomic ID: Suaeda glauca & 397272

Genome Assembly: GWHEQCX00000000

Short Name: rps4

Description: Ribosomal protein S4/S9 N-terminal domain

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chrA1	62944305	62946647	-	Sgl04939

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.96	58,891.81 Da	45.16	77.78	-0.52

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00165	S4	81	147	2.25659E-10	IPR002942
Pfam	PF00163	Ribosomal protein S4/S9 N-terminal domain	27	80	6.8E-14	IPR001912
Pfam	PF01479	S4 domain	81	118	3.1E-9	IPR002942
Pfam	PF03732	Retrotransposon gag protein	402	495	1.1E-10	IPR005162
SUPERFAMILY	SSF55174	Alpha-L RNA-binding motif	24	119	9.16E-35	-
Gene3D	G3DSA:1.10.1050.10	Ribosomal Protein S4 Delta 41; Chain A, domain 1	2	87	4.5E-22	-
Gene3D	G3DSA:3.10.290.10	-	88	163	1.0E-13	IPR036986
SMART	SM00363	s4_6	81	157	3.8E-4	IPR002942
SMART	SM01390	Ribosomal_S4_2	12	80	1.1E-8	IPR001912
ProSiteProfiles	PS50889	S4 RNA-binding domain profile.	81	148	9.356079	-
ProSitePatterns	PS00632	Ribosomal protein S4 signature.	79	103	-	IPR018079
MobiDBLite	mobidb-lite	consensus disorder prediction	290	305	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	285	305	-	-

Gene Ontology

Molecular Function:

GO:0003723 (RNA binding) GO:0019843 (rRNA binding)

KEGG Pathway

KO Term:

K02986 (small subunit ribosomal protein S4)

Pathway:

ko03010 (Ribosome) map03010 (Ribosome)

Best hit

Source	Best Hit ID	Description
TAIR	ATCG00380.1	chloroplast ribosomal protein S4. Chloroplast encoded ribosomal protein S4
RefSeq	XP_021714716.1	uncharacterized protein LOC110682696 [Chenopodium quinoa]
Swiss-Prot	P13788	Small ribosomal subunit protein uS4c OS=Spinacia oleracea OX=3562 GN=rps4 PE=1 SV=3
TrEMBL	A0A4D6NY72	30S ribosomal protein S4, chloroplastic OS=Suaeda japonica OX=90346 GN=rps4 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Suaeda glauca	144	Sgl00054, Sgl00059, Sgl00122, Sgl00123, Sgl00785, Sgl03218 ... Sgl03679, Sgl03687, Sgl03723, Sgl03991, Sgl03993, Sgl04037, Sgl04361, Sgl04545, Sgl04569, Sgl04770, Sgl04822, Sgl04824, Sgl04939, Sgl05054, Sgl05127, Sgl05190, Sgl05796, Sgl08539, Sgl08580, Sgl08790, Sgl08798, Sgl08830, Sgl09430, Sgl09591, Sgl09616, Sgl09814, Sgl09873, Sgl10006, Sgl10108, Sgl13177, Sgl13755, Sgl14041, Sgl14184, Sgl18330, Sgl18480, Sgl19162, Sgl19200, Sgl19418, Sgl19458, Sgl19545, Sgl20479, Sgl20541, Sgl20748, Sgl21403, Sgl21838, Sgl22031, Sgl25859, Sgl25920, Sgl26130, Sgl26728, Sgl27312, Sgl30940, Sgl31162, Sgl32072, Sgl32092, Sgl32156, Sgl32313, Sgl32394, Sgl32643, Sgl32876, Sgl32884, Sgl36504, Sgl36546, Sgl37358, Sgl37387, Sgl37610, Sgl37693, Sgl37935, Sgl38147, Sgl43535, Sgl44020, Sgl44110, Sgl44120, Sgl44521, Sgl44576, Sgl44829, Sgl45070, Sgl46105, Sgl47766, Sgl48331, Sgl48789, Sgl48877, Sgl49024, Sgl49287, Sgl49294, Sgl49339, Sgl49591, Sgl49839, Sgl50799, Sgl52998, Sgl53097, Sgl53337, Sgl53592, Sgl53793, Sgl53890, Sgl58273, Sgl58399, Sgl58853, Sgl58868, Sgl59058, Sgl59221, Sgl64584, Sgl65072, Sgl65136, Sgl65556, Sgl69033, Sgl69559, Sgl69651, Sgl69879, Sgl71961, Sgl71964, Sgl72009, Sgl72023, Sgl72113, Sgl72177, Sgl72187, Sgl72319, Sgl74411, Sgl75527, Sgl75571, Sgl75720, Sgl75740, Sgl75751, Sgl77963, Sgl78783, Sgl78923, Sgl79041, Sgl79422, Sgl79476, Sgl79562, Sgl79692, Sgl79825, Sgl81252, Sgl81496, Sgl81889, Sgl81952, Sgl82030, Sgl82151