halophFGD

Basic Information

Locus ID: Sgl04545

Species & Taxonomic ID: Suaeda glauca & 397272

Genome Assembly: GWHEQCX00000000

Description: DNA RNA polymerases superfamily protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chrA1	54043761	54046642	+	Sgl04545

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.15	65,585.12 Da	37.29	69.36	-0.79

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00303	retropepsin_like	367	429	1.4424E-7	-
Pfam	PF03732	Retrotransposon gag protein	111	204	1.5E-11	IPR005162
Pfam	PF08284	Retroviral aspartyl protease	382	434	2.4E-8	-
MobiDBLite	mobidb-lite	consensus disorder prediction	253	305	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	241	305	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	328	348	-	-

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_021775563.1	uncharacterized protein LOC110739413 [Chenopodium quinoa]	0
TrEMBL	A0A0K9R9P1	Retrotrans_gag domain-containing protein (Fragment) OS=Spinacia oleracea OX=3562 GN=SOVF_091050 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Suaeda glauca	144	Sgl00054, Sgl00059, Sgl00122, Sgl00123, Sgl00785, Sgl03218 ... Sgl03679, Sgl03687, Sgl03723, Sgl03991, Sgl03993, Sgl04037, Sgl04361, Sgl04545, Sgl04569, Sgl04770, Sgl04822, Sgl04824, Sgl04939, Sgl05054, Sgl05127, Sgl05190, Sgl05796, Sgl08539, Sgl08580, Sgl08790, Sgl08798, Sgl08830, Sgl09430, Sgl09591, Sgl09616, Sgl09814, Sgl09873, Sgl10006, Sgl10108, Sgl13177, Sgl13755, Sgl14041, Sgl14184, Sgl18330, Sgl18480, Sgl19162, Sgl19200, Sgl19418, Sgl19458, Sgl19545, Sgl20479, Sgl20541, Sgl20748, Sgl21403, Sgl21838, Sgl22031, Sgl25859, Sgl25920, Sgl26130, Sgl26728, Sgl27312, Sgl30940, Sgl31162, Sgl32072, Sgl32092, Sgl32156, Sgl32313, Sgl32394, Sgl32643, Sgl32876, Sgl32884, Sgl36504, Sgl36546, Sgl37358, Sgl37387, Sgl37610, Sgl37693, Sgl37935, Sgl38147, Sgl43535, Sgl44020, Sgl44110, Sgl44120, Sgl44521, Sgl44576, Sgl44829, Sgl45070, Sgl46105, Sgl47766, Sgl48331, Sgl48789, Sgl48877, Sgl49024, Sgl49287, Sgl49294, Sgl49339, Sgl49591, Sgl49839, Sgl50799, Sgl52998, Sgl53097, Sgl53337, Sgl53592, Sgl53793, Sgl53890, Sgl58273, Sgl58399, Sgl58853, Sgl58868, Sgl59058, Sgl59221, Sgl64584, Sgl65072, Sgl65136, Sgl65556, Sgl69033, Sgl69559, Sgl69651, Sgl69879, Sgl71961, Sgl71964, Sgl72009, Sgl72023, Sgl72113, Sgl72177, Sgl72187, Sgl72319, Sgl74411, Sgl75527, Sgl75571, Sgl75720, Sgl75740, Sgl75751, Sgl77963, Sgl78783, Sgl78923, Sgl79041, Sgl79422, Sgl79476, Sgl79562, Sgl79692, Sgl79825, Sgl81252, Sgl81496, Sgl81889, Sgl81952, Sgl82030, Sgl82151