Basic Information
Locus ID:
Sgl04338
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
1-deoxy-D-xylulose-5-phosphate synthase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA1 | 49691337 | 49696909 | + | Sgl04338 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.55 | 32,571.08 Da | 32.55 | 81.92 | 0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07033 | TPP_PYR_DXS_TK_like | 199 | 285 | 1.23518E-43 | - |
| CDD | cd07033 | TPP_PYR_DXS_TK_like | 57 | 143 | 1.23518E-43 | - |
| Pfam | PF02779 | Transketolase, pyrimidine binding domain | 183 | 286 | 1.4E-24 | IPR005475 |
| Pfam | PF02779 | Transketolase, pyrimidine binding domain | 41 | 144 | 1.4E-24 | IPR005475 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 23 | 145 | 6.68E-38 | IPR029061 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 166 | 294 | 1.92E-38 | IPR029061 |
| Gene3D | G3DSA:3.40.50.970 | - | 39 | 152 | 1.5E-35 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 181 | 295 | 1.2E-35 | - |
| SMART | SM00861 | Transket_pyr_3 | 182 | 295 | 6.5E-14 | IPR005475 |
| SMART | SM00861 | Transket_pyr_3 | 40 | 178 | 7.4E-24 | IPR005475 |
KEGG Pathway
Pathway:
ko00730 (Thiamine metabolism)
map00730 (Thiamine metabolism)
ko00900 (Terpenoid backbone biosynthesis)
map00900 (Terpenoid backbone biosynthesis)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01110 (Biosynthesis of secondary metabolites)
map01110 (Biosynthesis of secondary metabolites)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G15560.1 | Deoxyxylulose-5-phosphate synthase. Encodes a protein with 1-deoxyxylulose 5-phosphate synthase activity involved in the MEP pathway. It is essential for chloroplast development in Arabidopsis | 0 |
| RefSeq | XP_021607773.1 | probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic [Manihot esculenta] | 0 |
| O78328 | Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Capsicum annuum OX=4072 GN=TKT2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0L9TP22 | 1-deoxy-D-xylulose-5-phosphate synthase OS=Phaseolus angularis OX=3914 GN=LR48_Vigan01g146500 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg30242 |
| Amaranthaceae | Suaeda glauca | 9 | Sgl04338, Sgl09407, Sgl27108, Sgl43201, Sgl47995, Sgl53505 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G627800 |
| Salicaceae | Populus euphratica | 1 | populus_peu12111 |