Basic Information
Locus ID:
Sgl03950
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
transposon protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA1 | 41184791 | 41187823 | + | Sgl03950 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.07 | 67,672.98 Da | 40.33 | 68.85 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03004 | Plant transposase (Ptta/En/Spm family) | 341 | 429 | 2.5E-12 | IPR004252 |
| Pfam | PF02992 | Transposase family tnp2 | 37 | 245 | 3.7E-83 | IPR004242 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 569 | 592 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 576 | 592 | - | - |
| Coils | Coil | Coil | 508 | 528 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_048491426.1 | uncharacterized protein LOC125492751 [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A8J5Y0W9 | Transposase OS=Gossypium anomalum OX=47600 GN=CXB51_024836 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah007497 |
| Amaranthaceae | Beta vulgaris | 5 | BVRB_6g135340, BVRB_7g164200, BVRB_7g165950, BVRB_9g208240 ... |
| Amaranthaceae | Suaeda aralocaspica | 12 | GOSA_00014580, GOSA_00014581, GOSA_00016668, GOSA_00017776 ... |
| Amaranthaceae | Suaeda glauca | 24 | Sgl03145, Sgl03950, Sgl08246, Sgl09020, Sgl09021, Sgl10179 ... |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000002377, gene:ENSEOMG00000011354 ... |
| Amaranthaceae | Chenopodium quinoa | 5 | CQ.Regalona.r1.2BG0010590, CQ.Regalona.r1.2BG0014070 ... |