Basic Information
Locus ID:
Sgl03532
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Ribonuclease H protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA1 | 33101555 | 33102387 | + | Sgl03532 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.73 | 27,435.58 Da | 37.59 | 103.57 | 0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06222 | RNase_H_like | 89 | 203 | 1.11343E-27 | IPR044730 |
| Pfam | PF13456 | Reverse transcriptase-like | 97 | 205 | 1.7E-19 | IPR002156 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 96 | 208 | 3.79E-13 | IPR012337 |
| Gene3D | G3DSA:3.30.420.10 | - | 92 | 210 | 4.0E-16 | IPR036397 |
| ProSiteProfiles | PS50879 | RNase H domain profile. | 102 | 207 | 9.923616 | IPR002156 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_048493263.1 | uncharacterized protein LOC125493786 [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A2N9EM65 | Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS3683 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23361 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017683 |
| Amaranthaceae | Suaeda glauca | 26 | Sgl03531, Sgl03532, Sgl06702, Sgl08674, Sgl08675, Sgl10543 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.4AG0013210 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb3G20438, Lb4G25393 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000001l.137 |