Basic Information
Locus ID:
Sgl03531
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Ribonuclease H protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA1 | 33096544 | 33099640 | + | Sgl03531 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.46 | 115,213.02 Da | 51.07 | 72.53 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14111 | Domain of unknown function (DUF4283) | 6 | 104 | 1.3E-16 | IPR025558 |
| SUPERFAMILY | SSF56219 | DNase I-like | 593 | 812 | 2.22E-29 | IPR036691 |
| Gene3D | G3DSA:3.60.10.10 | Endonuclease/exonuclease/phosphatase | 595 | 812 | 3.2E-29 | IPR036691 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 376 | 442 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 274 | 304 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 347 | 370 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 176 | 214 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 347 | 442 | - | - |
| Coils | Coil | Coil | 900 | 920 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G01050.1 | zinc ion binding;nucleic acid binding. | 0 |
| RefSeq | XP_048497307.1 | uncharacterized protein LOC104885230 [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A2N9FPT3 | RNase H type-1 domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS17120 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23361 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017683 |
| Amaranthaceae | Suaeda glauca | 26 | Sgl03531, Sgl03532, Sgl06702, Sgl08674, Sgl08675, Sgl10543 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.4AG0013210 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb3G20438, Lb4G25393 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000001l.137 |