Basic Information
Locus ID:
Sgl03123
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
gag-polypeptide of LTR copia-type
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA1 | 27050503 | 27052377 | + | Sgl03123 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.48 | 72,436.62 Da | 40.97 | 72.77 | -0.78 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00098 | Zinc knuckle | 258 | 273 | 2.1E-4 | IPR001878 |
| Pfam | PF14223 | gag-polypeptide of LTR copia-type | 48 | 186 | 1.6E-25 | - |
| Pfam | PF00098 | Zinc knuckle | 568 | 582 | 4.9E-4 | IPR001878 |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 240 | 280 | 1.74E-6 | IPR036875 |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 562 | 588 | 2.99E-6 | IPR036875 |
| Gene3D | G3DSA:4.10.60.10 | - | 252 | 297 | 3.1E-6 | - |
| SMART | SM00343 | c2hcfinal6 | 567 | 583 | 8.9E-4 | IPR001878 |
| SMART | SM00343 | c2hcfinal6 | 258 | 274 | 0.0029 | IPR001878 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 568 | 583 | 9.998857 | IPR001878 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 259 | 273 | 9.48789 | IPR001878 |
| Coils | Coil | Coil | 490 | 510 | - | - |
| Coils | Coil | Coil | 400 | 448 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021713456.1 | uncharacterized protein LOC110681610 [Chenopodium quinoa] | 0 |
| TrEMBL | A2I5F8 | Integrase OS=Beta vulgaris OX=161934 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Suaeda glauca | 28 | Sgl00169, Sgl03111, Sgl03123, Sgl05219, Sgl08211, Sgl10299 ... |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC120106406 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132613087 |