Basic Information
Locus ID:
Sgl02567
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Calcineurin-like phosphoesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA1 | 22339330 | 22342919 | - | Sgl02567 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.42 | 51,313.39 Da | 30.69 | 84.94 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07397 | MPP_NostocDevT-like | 179 | 416 | 3.26932E-127 | IPR027629 |
| CDD | cd04322 | LysRS_N | 56 | 143 | 8.63363E-30 | IPR044136 |
| Pfam | PF00149 | Calcineurin-like phosphoesterase | 178 | 388 | 1.1E-12 | IPR004843 |
| Pfam | PF01336 | OB-fold nucleic acid binding domain | 56 | 136 | 3.8E-12 | IPR004365 |
| SUPERFAMILY | SSF56300 | Metallo-dependent phosphatases | 176 | 393 | 2.81E-22 | IPR029052 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 12 | 139 | 6.12E-23 | IPR012340 |
| Gene3D | G3DSA:2.40.50.140 | - | 8 | 144 | 6.4E-34 | - |
| Gene3D | G3DSA:3.60.21.10 | - | 174 | 446 | 5.8E-11 | IPR029052 |
| TIGRFAM | TIGR04168 | TIGR04168: TIGR04168 family protein | 199 | 451 | 5.4E-88 | IPR027629 |
Gene Ontology
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G58200.2 | Calcineurin-like metallo-phosphoesterase superfamily protein. | 0 |
| RefSeq | XP_021730036.1 | uncharacterized protein LOC110697010 [Chenopodium quinoa] | 0 |
| Q9ZPI1 | Lysine--tRNA ligase, cytoplasmic OS=Arabidopsis thaliana OX=3702 GN=At3g11710 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9QRP3 | Lysine--tRNA ligase OS=Spinacia oleracea OX=3562 GN=SOVF_148590 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg31566, jg33586, jg40982, jg40983 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_8909 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah014158 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g192450 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg25418 |
| Amaranthaceae | Salicornia europaea | 4 | Seu_jg19332, Seu_jg7396, Seu_jg7399, Seu_jg7400 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011116 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl02567, Sgl07722, Sgl41833, Sgl46633 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000006496, gene:ENSEOMG00000022508 ... |
| Amaranthaceae | Chenopodium quinoa | 6 | CQ.Regalona.r1.5AG0017320, CQ.Regalona.r1.5AG0017330 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30223200, pistato.v30266090 |
| Apiaceae | Apium graveolens | 1 | Ag2G00444 |
| Arecaceae | Cocos nucifera | 1 | contig69463550G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103724251 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.772.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri4G12752 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G58200.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10014084m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g19860.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g037740.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2525 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2665 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g08230 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0107s00013.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g25170 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.245 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00000925 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G00408 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.548, BH06.595, CH06.610 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0511210, gene-QOZ80_6BG0463230 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0658760.1 |
| Poaceae | Oryza coarctata | 2 | Oco11G003800, Oco12G003790 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g08390.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G065000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0405237, Pt_Chr0405260 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr14G002820, Chr21G002000 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G297300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG017820, gene_TRIDC7BG007200 |
| Poaceae | Triticum aestivum | 2 | TraesCS7B02G048800.1, TraesCS7D02G147800.1 |
| Poaceae | Zea mays | 1 | Zm00001eb374780_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-5004 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g29230 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.1087, evm.TU.LG20.784 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g18390 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.145 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-13933 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-13179, nbisL1-mrna-21266 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-16580, nbisL1-mrna-4954 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000033l.91 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015070 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-16678, nbisL1-mrna-1890 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-14536 |
| Salicaceae | Populus euphratica | 3 | populus_peu05628, populus_peu12261, populus_peu12269 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132603023, gene-LOC132603029 |
| Solanaceae | Solanum chilense | 1 | SOLCI002277500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107024172 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_8137 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G1113 |