Basic Information
Locus ID:
Sgl02265
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA1 | 20072701 | 20073909 | + | Sgl02265 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.08 | 47,406.48 Da | 49.17 | 89.92 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 9 | 37 | 8.7E-5 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 8 | 41 | 5.49E-6 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 6 | 44 | 1.1E-5 | - |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 99 | 256 | 1.1E-14 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 3 | 51 | 8.570165 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23880.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_021734128.1 | F-box protein CPR30-like [Chenopodium quinoa] | 0 |
| Q9LIR8 | F-box/kelch-repeat protein At3g23880 OS=Arabidopsis thaliana OX=3702 GN=At3g23880 PE=2 SV=1 | 0 | |
| TrEMBL | A0A200PSL6 | F-box domain OS=Macleaya cordata OX=56857 GN=BVC80_1649g15 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 3 | Ah000544, Ah000545, Ah000548 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g117790 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017365 |
| Amaranthaceae | Suaeda glauca | 16 | Sgl02265, Sgl02998, Sgl03016, Sgl07416, Sgl08131, Sgl33489 ... |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000005978, gene:ENSEOMG00000020505 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.5AG0023440, CQ.Regalona.r1.5BG0024920 ... |