Basic Information
Locus ID:
Sgl02069
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA1 | 18727822 | 18733447 | + | Sgl02069 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.19 | 48,466.19 Da | 31.93 | 71.81 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 148 | 184 | 1.7E-5 | IPR001680 |
| Pfam | PF18044 | CCCH-type zinc finger | 119 | 139 | 3.5E-8 | IPR041367 |
| Pfam | PF00400 | WD domain, G-beta repeat | 310 | 344 | 0.026 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 272 | 305 | 0.014 | IPR001680 |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 115 | 140 | 1.1E-7 | IPR036855 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 147 | 435 | 6.68E-47 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 238 | 440 | 4.3E-32 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 144 | 230 | 1.0E-9 | IPR015943 |
| Gene3D | G3DSA:3.30.1370.210 | - | 7 | 67 | 2.0E-5 | - |
| Gene3D | G3DSA:2.30.30.1190 | - | 98 | 143 | 4.9E-5 | - |
| SMART | SM00320 | WD40_4 | 224 | 261 | 16.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 308 | 345 | 9.1E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 349 | 392 | 18.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 146 | 184 | 1.8E-5 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 115 | 141 | 8.4E-6 | IPR000571 |
| SMART | SM00356 | c3hfinal6 | 28 | 51 | 0.15 | IPR000571 |
| SMART | SM00320 | WD40_4 | 268 | 305 | 0.0094 | IPR001680 |
| SMART | SM00320 | WD40_4 | 395 | 432 | 1.2 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 275 | 308 | 9.625601 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 275 | 314 | 12.112524 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 315 | 354 | 8.570195 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 153 | 193 | 11.544415 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 115 | 142 | 14.727368 | IPR000571 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 26 | 52 | 10.408382 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 153 | 184 | 8.992876 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 292 | 306 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 171 | 185 | 1.5E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 292 | 306 | 1.5E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 332 | 346 | 1.5E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 54 | 88 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 54 | 78 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G51980.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_010693461.2 | zinc finger CCCH domain-containing protein 48 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9FNZ1 | Zinc finger CCCH domain-containing protein 63 OS=Arabidopsis thaliana OX=3702 GN=ZFWD2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QWH9 | Zinc finger CCCH domain-containing protein 48-like OS=Spinacia oleracea OX=3562 GN=SOVF_133470 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology