Basic Information
Locus ID:
Sgl02044
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA1 | 18558479 | 18570293 | + | Sgl02044 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.70 | 71,223.42 Da | 60.13 | 71.39 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 187 | 218 | 1.0E-4 | IPR018957 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 258 | 317 | 2.9E-10 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 336 | 375 | 7.5E-7 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 328 | 379 | 1.77E-9 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 183 | 268 | 3.53E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 258 | 324 | 2.47E-9 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 313 | 557 | 4.8E-32 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 181 | 268 | 2.2E-14 | IPR013083 |
| SMART | SM00647 | ibrneu5 | 321 | 385 | 0.13 | IPR002867 |
| SMART | SM00184 | ring_2 | 282 | 345 | 1.5 | IPR001841 |
| SMART | SM00184 | ring_2 | 187 | 235 | 0.15 | IPR001841 |
| SMART | SM00647 | ibrneu5 | 256 | 317 | 4.0E-14 | IPR002867 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 577 | 612 | 8.264401 | IPR001876 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 187 | 233 | 10.114045 | IPR001841 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 183 | 395 | 28.87689 | IPR044066 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 590 | 609 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 9 | 29 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 35 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65430.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_019107942.2 | probable E3 ubiquitin-protein ligase ARI8 isoform X3 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8W468 | Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana OX=3702 GN=ARI8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5B7C4U8 | RBR-type E3 ubiquitin transferase OS=Davidia involucrata OX=16924 GN=Din_043814 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology