HalophFGD

  • Home
  • Species
  • Search
  • Tools
    • Blast
    • GO enrichment
    • KEGG enrichment
    • Genome browser
    • Sequence extract
    • Network
    • Motif Enrichment
    • Motif Scan
    • Primer Design
  • Download
  • Manual
  • Contact
Basic Information
Locus ID: Sgl01917
Species & Taxonomic ID: Suaeda glauca & 397272
Genome Assembly: GWHEQCX00000000
Description: U-box domain-containing protein
Maps and Mapping Data
Chromosome Start End Strand ID
chrA1 17826381 17851151 + Sgl01917
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
7.09 298,067.97 Da 42.88 82.91 -0.40
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
CDD cd01989 STK_N 904 1059 5.15702E-36 -
CDD cd01989 STK_N 13 168 9.73931E-34 -
CDD cd16655 RING-Ubox_WDSUB1_like 822 862 7.92706E-22 -
CDD cd16655 RING-Ubox_WDSUB1_like 1777 1817 3.57197E-20 -
CDD cd16655 RING-Ubox_WDSUB1_like 2648 2688 7.89273E-21 -
CDD cd01989 STK_N 1861 2024 2.10256E-28 -
Pfam PF07714 Protein tyrosine and serine/threonine kinase 1492 1745 2.5E-37 IPR001245
Pfam PF00069 Protein kinase domain 536 769 1.5E-37 IPR000719
Pfam PF00069 Protein kinase domain 2361 2595 2.2E-38 IPR000719
Pfam PF04564 U-box domain 2645 2712 9.8E-16 IPR003613
Pfam PF04564 U-box domain 1774 1838 2.9E-14 IPR003613
Pfam PF04564 U-box domain 819 881 3.7E-14 IPR003613
SUPERFAMILY SSF56112 Protein kinase-like (PK-like) 513 790 2.97E-63 IPR011009
SUPERFAMILY SSF57850 RING/U-box 2633 2712 2.21E-22 -
SUPERFAMILY SSF56112 Protein kinase-like (PK-like) 2340 2617 4.05E-63 IPR011009
SUPERFAMILY SSF56112 Protein kinase-like (PK-like) 1469 1746 3.78E-62 IPR011009
SUPERFAMILY SSF57850 RING/U-box 1761 1838 5.56E-22 -
SUPERFAMILY SSF57850 RING/U-box 808 882 1.68E-21 -
Gene3D G3DSA:3.30.200.20 Phosphorylase Kinase; domain 1 1452 1559 4.0E-19 -
Gene3D G3DSA:3.30.40.10 Zinc/RING finger domain, C3HC4 (zinc finger) 817 884 1.2E-23 IPR013083
Gene3D G3DSA:3.30.200.20 Phosphorylase Kinase; domain 1 502 604 1.3E-20 -
Gene3D G3DSA:1.10.510.10 Transferase(Phosphotransferase) domain 1 1560 1772 1.7E-44 -
Gene3D G3DSA:1.10.510.10 Transferase(Phosphotransferase) domain 1 605 816 4.1E-45 -
Gene3D G3DSA:1.10.510.10 Transferase(Phosphotransferase) domain 1 2431 2643 1.0E-45 -
Gene3D G3DSA:3.30.40.10 Zinc/RING finger domain, C3HC4 (zinc finger) 1773 1842 1.4E-24 IPR013083
Gene3D G3DSA:3.30.200.20 Phosphorylase Kinase; domain 1 2332 2430 7.2E-21 -
Gene3D G3DSA:3.30.40.10 Zinc/RING finger domain, C3HC4 (zinc finger) 2644 2713 1.1E-23 IPR013083
SMART SM00220 serkin_6 2358 2620 4.7E-26 IPR000719
SMART SM00220 serkin_6 532 797 1.6E-26 IPR000719
SMART SM00220 serkin_6 1487 1752 1.5E-24 IPR000719
SMART SM00504 Ubox_2 821 883 1.8E-23 IPR003613
SMART SM00504 Ubox_2 1776 1838 6.0E-24 IPR003613
SMART SM00504 Ubox_2 2647 2709 7.3E-22 IPR003613
ProSiteProfiles PS51698 U-box domain profile. 2643 2713 27.078453 IPR003613
ProSiteProfiles PS50011 Protein kinase domain profile. 1487 1779 33.007851 IPR000719
ProSiteProfiles PS51698 U-box domain profile. 817 890 27.096146 IPR003613
ProSiteProfiles PS50011 Protein kinase domain profile. 2358 2648 33.799355 IPR000719
ProSiteProfiles PS51698 U-box domain profile. 1772 1845 27.299597 IPR003613
ProSiteProfiles PS50011 Protein kinase domain profile. 532 797 33.318798 IPR000719
ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 650 662 - IPR008271
ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 2476 2488 - IPR008271
ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 1605 1617 - IPR008271
ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 1493 1514 - IPR017441
ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 2364 2385 - IPR017441
ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 538 559 - IPR017441
MobiDBLite mobidb-lite consensus disorder prediction 2042 2098 - -
MobiDBLite mobidb-lite consensus disorder prediction 2042 2106 - -
MobiDBLite mobidb-lite consensus disorder prediction 1082 1117 - -
MobiDBLite mobidb-lite consensus disorder prediction 1165 1184 - -
MobiDBLite mobidb-lite consensus disorder prediction 456 498 - -
MobiDBLite mobidb-lite consensus disorder prediction 2294 2328 - -
MobiDBLite mobidb-lite consensus disorder prediction 276 301 - -
MobiDBLite mobidb-lite consensus disorder prediction 481 498 - -
MobiDBLite mobidb-lite consensus disorder prediction 1082 1102 - -
MobiDBLite mobidb-lite consensus disorder prediction 178 254 - -
MobiDBLite mobidb-lite consensus disorder prediction 2224 2242 - -
MobiDBLite mobidb-lite consensus disorder prediction 190 254 - -
MobiDBLite mobidb-lite consensus disorder prediction 2213 2242 - -
Coils Coil Coil 443 466 - -
Coils Coil Coil 1390 1421 - -
Coils Coil Coil 2277 2300 - -
Coils Coil Coil 489 509 - -
Coils Coil Coil 2246 2266 - -
Gene Ontology
Biological Process:
GO:0006468 (protein phosphorylation) GO:0016567 (protein ubiquitination)
Molecular Function:
GO:0004672 (protein kinase activity) GO:0004842 (ubiquitin-protein transferase activity) GO:0005524 (ATP binding)
KEGG Pathway
KO Term:
K04730 (interleukin-1 receptor-associated kinase 1 [EC:2.7.11.1])
Pathway:
ko04010 (MAPK signaling pathway) map04010 (MAPK signaling pathway) map04064 (NF-kappa B signaling pathway) map04620 (Toll-like receptor signaling pathway) ko04624 (Toll and Imd signaling pathway) map04624 (Toll and Imd signaling pathway)
Best hit
Source Best Hit ID Description E-value
TAIR AT4G25160.1 U-box domain-containing protein kinase family protein. 0
RefSeq XP_019103851.2 U-box domain-containing protein 35 isoform X2 [Beta vulgaris subsp. vulgaris] 0
Swiss-Prot Q9SW11 U-box domain-containing protein 35 OS=Arabidopsis thaliana OX=3702 GN=PUB35 PE=2 SV=2 0
TrEMBL A0A803MKS8 Serine/threonine-protein kinase OS=Chenopodium quinoa OX=63459 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Amaranthaceae Atriplex hortensis 1 Ah018816
Amaranthaceae Salicornia europaea 1 Seu_jg15369
Amaranthaceae Suaeda glauca 3 Sgl01894, Sgl01917, Sgl07075
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.