Basic Information
Locus ID:
Sgl01917
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA1 | 17826381 | 17851151 | + | Sgl01917 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.09 | 298,067.97 Da | 42.88 | 82.91 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01989 | STK_N | 904 | 1059 | 5.15702E-36 | - |
| CDD | cd01989 | STK_N | 13 | 168 | 9.73931E-34 | - |
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 822 | 862 | 7.92706E-22 | - |
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 1777 | 1817 | 3.57197E-20 | - |
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 2648 | 2688 | 7.89273E-21 | - |
| CDD | cd01989 | STK_N | 1861 | 2024 | 2.10256E-28 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 1492 | 1745 | 2.5E-37 | IPR001245 |
| Pfam | PF00069 | Protein kinase domain | 536 | 769 | 1.5E-37 | IPR000719 |
| Pfam | PF00069 | Protein kinase domain | 2361 | 2595 | 2.2E-38 | IPR000719 |
| Pfam | PF04564 | U-box domain | 2645 | 2712 | 9.8E-16 | IPR003613 |
| Pfam | PF04564 | U-box domain | 1774 | 1838 | 2.9E-14 | IPR003613 |
| Pfam | PF04564 | U-box domain | 819 | 881 | 3.7E-14 | IPR003613 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 513 | 790 | 2.97E-63 | IPR011009 |
| SUPERFAMILY | SSF57850 | RING/U-box | 2633 | 2712 | 2.21E-22 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 2340 | 2617 | 4.05E-63 | IPR011009 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1469 | 1746 | 3.78E-62 | IPR011009 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1761 | 1838 | 5.56E-22 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 808 | 882 | 1.68E-21 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1452 | 1559 | 4.0E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 817 | 884 | 1.2E-23 | IPR013083 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 502 | 604 | 1.3E-20 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1560 | 1772 | 1.7E-44 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 605 | 816 | 4.1E-45 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 2431 | 2643 | 1.0E-45 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1773 | 1842 | 1.4E-24 | IPR013083 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 2332 | 2430 | 7.2E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 2644 | 2713 | 1.1E-23 | IPR013083 |
| SMART | SM00220 | serkin_6 | 2358 | 2620 | 4.7E-26 | IPR000719 |
| SMART | SM00220 | serkin_6 | 532 | 797 | 1.6E-26 | IPR000719 |
| SMART | SM00220 | serkin_6 | 1487 | 1752 | 1.5E-24 | IPR000719 |
| SMART | SM00504 | Ubox_2 | 821 | 883 | 1.8E-23 | IPR003613 |
| SMART | SM00504 | Ubox_2 | 1776 | 1838 | 6.0E-24 | IPR003613 |
| SMART | SM00504 | Ubox_2 | 2647 | 2709 | 7.3E-22 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 2643 | 2713 | 27.078453 | IPR003613 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1487 | 1779 | 33.007851 | IPR000719 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 817 | 890 | 27.096146 | IPR003613 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 2358 | 2648 | 33.799355 | IPR000719 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 1772 | 1845 | 27.299597 | IPR003613 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 532 | 797 | 33.318798 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 650 | 662 | - | IPR008271 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 2476 | 2488 | - | IPR008271 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1605 | 1617 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 1493 | 1514 | - | IPR017441 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 2364 | 2385 | - | IPR017441 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 538 | 559 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2042 | 2098 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2042 | 2106 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1082 | 1117 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1165 | 1184 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 456 | 498 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2294 | 2328 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 276 | 301 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 481 | 498 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1082 | 1102 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 178 | 254 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2224 | 2242 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 190 | 254 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2213 | 2242 | - | - |
| Coils | Coil | Coil | 443 | 466 | - | - |
| Coils | Coil | Coil | 1390 | 1421 | - | - |
| Coils | Coil | Coil | 2277 | 2300 | - | - |
| Coils | Coil | Coil | 489 | 509 | - | - |
| Coils | Coil | Coil | 2246 | 2266 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25160.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_019103851.2 | U-box domain-containing protein 35 isoform X2 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9SW11 | U-box domain-containing protein 35 OS=Arabidopsis thaliana OX=3702 GN=PUB35 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803MKS8 | Serine/threonine-protein kinase OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah018816 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg15369 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl01894, Sgl01917, Sgl07075 |