Basic Information
Locus ID:
Sgl01894
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA1 | 17686095 | 17706965 | + | Sgl01894 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.18 | 294,903.50 Da | 42.59 | 85.01 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01989 | STK_N | 1825 | 1988 | 1.17107E-28 | - |
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 822 | 862 | 7.82221E-22 | - |
| CDD | cd01989 | STK_N | 904 | 1059 | 5.08641E-36 | - |
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 2612 | 2652 | 7.78831E-21 | - |
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 1741 | 1781 | 3.52472E-20 | - |
| CDD | cd01989 | STK_N | 13 | 168 | 2.42727E-34 | - |
| Pfam | PF00069 | Protein kinase domain | 536 | 769 | 1.4E-37 | IPR000719 |
| Pfam | PF00069 | Protein kinase domain | 2324 | 2559 | 1.4E-38 | IPR000719 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 1456 | 1709 | 2.5E-37 | IPR001245 |
| Pfam | PF04564 | U-box domain | 819 | 881 | 3.6E-14 | IPR003613 |
| Pfam | PF04564 | U-box domain | 2609 | 2676 | 9.7E-16 | IPR003613 |
| Pfam | PF04564 | U-box domain | 1738 | 1802 | 2.9E-14 | IPR003613 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 2304 | 2581 | 2.97E-63 | IPR011009 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1433 | 1710 | 3.78E-62 | IPR011009 |
| SUPERFAMILY | SSF57850 | RING/U-box | 2596 | 2676 | 1.85E-22 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 1725 | 1803 | 2.03E-22 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 513 | 790 | 2.83E-63 | IPR011009 |
| SUPERFAMILY | SSF57850 | RING/U-box | 808 | 882 | 1.68E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 817 | 884 | 1.2E-23 | IPR013083 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 2395 | 2607 | 1.6E-45 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1524 | 1736 | 1.7E-44 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1416 | 1523 | 4.0E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 2608 | 2677 | 1.1E-23 | IPR013083 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 605 | 816 | 4.0E-45 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 502 | 604 | 1.3E-20 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 2296 | 2394 | 2.3E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1737 | 1806 | 1.1E-24 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 2611 | 2673 | 7.3E-22 | IPR003613 |
| SMART | SM00220 | serkin_6 | 532 | 797 | 1.6E-26 | IPR000719 |
| SMART | SM00504 | Ubox_2 | 821 | 883 | 1.8E-23 | IPR003613 |
| SMART | SM00504 | Ubox_2 | 1740 | 1802 | 6.0E-24 | IPR003613 |
| SMART | SM00220 | serkin_6 | 2322 | 2584 | 3.5E-27 | IPR000719 |
| SMART | SM00220 | serkin_6 | 1451 | 1716 | 1.5E-24 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 532 | 797 | 33.318798 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 2322 | 2612 | 34.039631 | IPR000719 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 1736 | 1809 | 26.052353 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 2607 | 2677 | 27.078453 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 817 | 890 | 27.096146 | IPR003613 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1451 | 1743 | 33.007851 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1569 | 1581 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 2328 | 2349 | - | IPR017441 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 1457 | 1478 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 650 | 662 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 538 | 559 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 2440 | 2452 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 222 | 254 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2178 | 2206 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 190 | 215 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 481 | 498 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 449 | 465 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 178 | 254 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2188 | 2206 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2006 | 2062 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2258 | 2292 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 276 | 299 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2006 | 2070 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 449 | 498 | - | - |
| Coils | Coil | Coil | 1354 | 1385 | - | - |
| Coils | Coil | Coil | 2210 | 2230 | - | - |
| Coils | Coil | Coil | 2241 | 2264 | - | - |
| Coils | Coil | Coil | 2587 | 2607 | - | - |
| Coils | Coil | Coil | 489 | 509 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25160.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_019103851.2 | U-box domain-containing protein 35 isoform X2 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9SW11 | U-box domain-containing protein 35 OS=Arabidopsis thaliana OX=3702 GN=PUB35 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803MKS8 | Serine/threonine-protein kinase OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah018816 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg15369 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl01894, Sgl01917, Sgl07075 |