HalophFGD

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Basic Information
Locus ID: Sgl01894
Species & Taxonomic ID: Suaeda glauca & 397272
Genome Assembly: GWHEQCX00000000
Description: U-box domain-containing protein
Maps and Mapping Data
Chromosome Start End Strand ID
chrA1 17686095 17706965 + Sgl01894
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
7.18 294,903.50 Da 42.59 85.01 -0.37
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
CDD cd01989 STK_N 1825 1988 1.17107E-28 -
CDD cd16655 RING-Ubox_WDSUB1_like 822 862 7.82221E-22 -
CDD cd01989 STK_N 904 1059 5.08641E-36 -
CDD cd16655 RING-Ubox_WDSUB1_like 2612 2652 7.78831E-21 -
CDD cd16655 RING-Ubox_WDSUB1_like 1741 1781 3.52472E-20 -
CDD cd01989 STK_N 13 168 2.42727E-34 -
Pfam PF00069 Protein kinase domain 536 769 1.4E-37 IPR000719
Pfam PF00069 Protein kinase domain 2324 2559 1.4E-38 IPR000719
Pfam PF07714 Protein tyrosine and serine/threonine kinase 1456 1709 2.5E-37 IPR001245
Pfam PF04564 U-box domain 819 881 3.6E-14 IPR003613
Pfam PF04564 U-box domain 2609 2676 9.7E-16 IPR003613
Pfam PF04564 U-box domain 1738 1802 2.9E-14 IPR003613
SUPERFAMILY SSF56112 Protein kinase-like (PK-like) 2304 2581 2.97E-63 IPR011009
SUPERFAMILY SSF56112 Protein kinase-like (PK-like) 1433 1710 3.78E-62 IPR011009
SUPERFAMILY SSF57850 RING/U-box 2596 2676 1.85E-22 -
SUPERFAMILY SSF57850 RING/U-box 1725 1803 2.03E-22 -
SUPERFAMILY SSF56112 Protein kinase-like (PK-like) 513 790 2.83E-63 IPR011009
SUPERFAMILY SSF57850 RING/U-box 808 882 1.68E-21 -
Gene3D G3DSA:3.30.40.10 Zinc/RING finger domain, C3HC4 (zinc finger) 817 884 1.2E-23 IPR013083
Gene3D G3DSA:1.10.510.10 Transferase(Phosphotransferase) domain 1 2395 2607 1.6E-45 -
Gene3D G3DSA:1.10.510.10 Transferase(Phosphotransferase) domain 1 1524 1736 1.7E-44 -
Gene3D G3DSA:3.30.200.20 Phosphorylase Kinase; domain 1 1416 1523 4.0E-19 -
Gene3D G3DSA:3.30.40.10 Zinc/RING finger domain, C3HC4 (zinc finger) 2608 2677 1.1E-23 IPR013083
Gene3D G3DSA:1.10.510.10 Transferase(Phosphotransferase) domain 1 605 816 4.0E-45 -
Gene3D G3DSA:3.30.200.20 Phosphorylase Kinase; domain 1 502 604 1.3E-20 -
Gene3D G3DSA:3.30.200.20 Phosphorylase Kinase; domain 1 2296 2394 2.3E-21 -
Gene3D G3DSA:3.30.40.10 Zinc/RING finger domain, C3HC4 (zinc finger) 1737 1806 1.1E-24 IPR013083
SMART SM00504 Ubox_2 2611 2673 7.3E-22 IPR003613
SMART SM00220 serkin_6 532 797 1.6E-26 IPR000719
SMART SM00504 Ubox_2 821 883 1.8E-23 IPR003613
SMART SM00504 Ubox_2 1740 1802 6.0E-24 IPR003613
SMART SM00220 serkin_6 2322 2584 3.5E-27 IPR000719
SMART SM00220 serkin_6 1451 1716 1.5E-24 IPR000719
ProSiteProfiles PS50011 Protein kinase domain profile. 532 797 33.318798 IPR000719
ProSiteProfiles PS50011 Protein kinase domain profile. 2322 2612 34.039631 IPR000719
ProSiteProfiles PS51698 U-box domain profile. 1736 1809 26.052353 IPR003613
ProSiteProfiles PS51698 U-box domain profile. 2607 2677 27.078453 IPR003613
ProSiteProfiles PS51698 U-box domain profile. 817 890 27.096146 IPR003613
ProSiteProfiles PS50011 Protein kinase domain profile. 1451 1743 33.007851 IPR000719
ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 1569 1581 - IPR008271
ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 2328 2349 - IPR017441
ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 1457 1478 - IPR017441
ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 650 662 - IPR008271
ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 538 559 - IPR017441
ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 2440 2452 - IPR008271
MobiDBLite mobidb-lite consensus disorder prediction 222 254 - -
MobiDBLite mobidb-lite consensus disorder prediction 2178 2206 - -
MobiDBLite mobidb-lite consensus disorder prediction 190 215 - -
MobiDBLite mobidb-lite consensus disorder prediction 481 498 - -
MobiDBLite mobidb-lite consensus disorder prediction 449 465 - -
MobiDBLite mobidb-lite consensus disorder prediction 178 254 - -
MobiDBLite mobidb-lite consensus disorder prediction 2188 2206 - -
MobiDBLite mobidb-lite consensus disorder prediction 2006 2062 - -
MobiDBLite mobidb-lite consensus disorder prediction 2258 2292 - -
MobiDBLite mobidb-lite consensus disorder prediction 276 299 - -
MobiDBLite mobidb-lite consensus disorder prediction 2006 2070 - -
MobiDBLite mobidb-lite consensus disorder prediction 449 498 - -
Coils Coil Coil 1354 1385 - -
Coils Coil Coil 2210 2230 - -
Coils Coil Coil 2241 2264 - -
Coils Coil Coil 2587 2607 - -
Coils Coil Coil 489 509 - -
Gene Ontology
Biological Process:
GO:0006468 (protein phosphorylation) GO:0016567 (protein ubiquitination)
Molecular Function:
GO:0004672 (protein kinase activity) GO:0004842 (ubiquitin-protein transferase activity) GO:0005524 (ATP binding)
KEGG Pathway
KO Term:
K04730 (interleukin-1 receptor-associated kinase 1 [EC:2.7.11.1])
Pathway:
ko04010 (MAPK signaling pathway) map04010 (MAPK signaling pathway) map04064 (NF-kappa B signaling pathway) map04620 (Toll-like receptor signaling pathway) ko04624 (Toll and Imd signaling pathway) map04624 (Toll and Imd signaling pathway)
Best hit
Source Best Hit ID Description E-value
TAIR AT4G25160.1 U-box domain-containing protein kinase family protein. 0
RefSeq XP_019103851.2 U-box domain-containing protein 35 isoform X2 [Beta vulgaris subsp. vulgaris] 0
Swiss-Prot Q9SW11 U-box domain-containing protein 35 OS=Arabidopsis thaliana OX=3702 GN=PUB35 PE=2 SV=2 0
TrEMBL A0A803MKS8 Serine/threonine-protein kinase OS=Chenopodium quinoa OX=63459 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Amaranthaceae Atriplex hortensis 1 Ah018816
Amaranthaceae Salicornia europaea 1 Seu_jg15369
Amaranthaceae Suaeda glauca 3 Sgl01894, Sgl01917, Sgl07075
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.