Basic Information
Locus ID:
Sgl01605
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Polygalacturonase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA1 | 15877042 | 15881849 | - | Sgl01605 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.65 | 50,656.57 Da | 42.82 | 73.56 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 109 | 423 | 4.4E-84 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 71 | 458 | 7.93E-123 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 67 | 457 | 1.9E-117 | IPR012334 |
| SMART | SM00710 | pbh1 | 316 | 337 | 10.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 236 | 262 | 760.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 263 | 284 | 150.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 286 | 306 | 2400.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 345 | 366 | 3100.0 | IPR006626 |
| ProSitePatterns | PS00502 | Polygalacturonase active site. | 293 | 306 | - | IPR000743 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 49 | 63 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 35 | 63 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48100.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | XP_021752444.1 | polygalacturonase At1g48100-like [Chenopodium quinoa] | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0J8CPJ4 | Polygalacturonase At1g80170 OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_3g059660 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology