Basic Information
Locus ID:
Sgl01602
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
DEAD-box ATP-dependent RNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA1 | 15843309 | 15852747 | + | Sgl01602 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.95 | 129,381.51 Da | 68.45 | 54.81 | -0.87 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 723 | 852 | 4.99635E-62 | - |
| CDD | cd00201 | WW | 23 | 52 | 1.63469E-4 | IPR001202 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 528 | 698 | 2.5E-49 | IPR011545 |
| Pfam | PF00397 | WW domain | 22 | 52 | 3.3E-6 | IPR001202 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 735 | 843 | 1.2E-31 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 576 | 858 | 1.39E-75 | IPR027417 |
| SUPERFAMILY | SSF51045 | WW domain | 14 | 53 | 8.22E-8 | IPR036020 |
| Gene3D | G3DSA:2.20.70.10 | - | 16 | 56 | 5.8E-6 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 454 | 712 | 2.8E-86 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 713 | 884 | 5.6E-59 | IPR027417 |
| SMART | SM00487 | ultradead3 | 523 | 726 | 4.8E-65 | IPR014001 |
| SMART | SM00456 | ww_5 | 21 | 54 | 3.2E-7 | IPR001202 |
| SMART | SM00490 | helicmild6 | 763 | 843 | 1.5E-33 | IPR001650 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 20 | 54 | 11.349 | IPR001202 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 738 | 882 | 25.223057 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 535 | 709 | 31.062593 | IPR014001 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 26 | 52 | - | IPR001202 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 655 | 663 | - | IPR000629 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 217 | 237 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 69 | 85 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1132 | 1159 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 965 | 980 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 98 | 120 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1103 | 1131 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 66 | 85 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1068 | 1102 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 98 | 122 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1007 | 1051 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1052 | 1067 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 290 | 309 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 134 | 196 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 900 | 1184 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06480.1 | DEAD box RNA helicase family protein. | 0 |
| RefSeq | XP_021757000.1 | DEAD-box ATP-dependent RNA helicase 40-like [Chenopodium quinoa] | 0 |
| Q9SQV1 | DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana OX=3702 GN=RH40 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QDW7 | DEAD-box ATP-dependent RNA helicase 40 OS=Spinacia oleracea OX=3562 GN=SOVF_190160 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology