Basic Information
Locus ID:
Sgl01566
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA1 | 15538940 | 15550713 | - | Sgl01566 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.59 | 47,981.03 Da | 49.05 | 79.14 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14379 | UBA1_Rad23_plant | 212 | 261 | 3.1147E-30 | - |
| CDD | cd01805 | Ubl_Rad23 | 50 | 123 | 5.96316E-29 | - |
| Pfam | PF09280 | XPC-binding domain | 319 | 374 | 2.6E-22 | IPR015360 |
| Pfam | PF00240 | Ubiquitin family | 52 | 125 | 8.4E-17 | IPR000626 |
| Pfam | PF00627 | UBA/TS-N domain | 399 | 435 | 7.9E-11 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 219 | 256 | 1.1E-13 | IPR015940 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 50 | 128 | 2.99E-21 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 379 | 442 | 5.8E-15 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 215 | 265 | 1.19E-11 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 317 | 382 | 3.66E-22 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 391 | 440 | 3.6E-22 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 211 | 261 | 2.1E-20 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 309 | 374 | 3.1E-27 | IPR036353 |
| Gene3D | G3DSA:3.10.20.90 | - | 45 | 126 | 4.9E-26 | - |
| SMART | SM00165 | uba_6 | 218 | 258 | 1.4E-4 | IPR015940 |
| SMART | SM00727 | CBM | 317 | 360 | 9.4E-6 | IPR006636 |
| SMART | SM00165 | uba_6 | 400 | 437 | 1.6E-5 | IPR015940 |
| SMART | SM00213 | ubq_7 | 50 | 124 | 8.6E-22 | IPR000626 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 50 | 443 | 1.5E-130 | IPR004806 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 50 | 128 | 19.912811 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 398 | 438 | 14.595147 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 216 | 259 | 12.450505 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 394 | 410 | 2.0E-30 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 426 | 441 | 2.0E-30 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 411 | 425 | 2.0E-30 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 345 | 367 | 2.0E-30 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 167 | 200 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 146 | 166 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 129 | 145 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 129 | 200 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79650.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_010695313.1 | probable ubiquitin receptor RAD23a isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q84L33 | Ubiquitin receptor RAD23b OS=Arabidopsis thaliana OX=3702 GN=RAD23B PE=1 SV=3 | 0 | |
| TrEMBL | A0A0J8BCQ7 | Ubiquitin receptor RAD23 OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_5g124190 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology