Basic Information
Locus ID:
Sgl01516
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
PAM68-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA1 | 15112915 | 15113681 | + | Sgl01516 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.79 | 20,283.71 Da | 37.56 | 77.21 | -0.36 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G52780.1 | Protein of unknown function (DUF3464). | 0 |
| RefSeq | XP_021726745.1 | uncharacterized protein PAM68-like [Chenopodium quinoa] | 0 |
| Q9LTD9 | Uncharacterized protein PAM68-like OS=Arabidopsis thaliana OX=3702 GN=At5g52780 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803M061 | Protein PAM68, chloroplastic OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg13940, jg13944, jg23618 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_3250, gene_9239 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah035523 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_2g027170, BVRB_3g053260 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg21810, Sbi_jg22004, Sbi_jg38098, Sbi_jg6227 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg15623, Seu_jg15937 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00020334 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl01516, Sgl06684, Sgl63232, Sgl63368, Sgl67844 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000000155, gene:ENSEOMG00000017711 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0018960, CQ.Regalona.r1.2BG0020610 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30183620, pistato.v30245620 |
| Apiaceae | Apium graveolens | 1 | Ag10G02580 |
| Arecaceae | Cocos nucifera | 2 | COCNU_07G008000, COCNU_10G009840 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103716320, gene-LOC103718492, gene-LOC120106038 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.2533.V1.1, AsparagusV1_10.60.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri13G05711, Ftri18G27078, Ftri3G24450 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT4G19100.1, AT5G52780.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10014707m.g.v1.0, Thhalv10026226m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp6g14920.v2.2, Sp7g17800.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB05g032390.2N, BniB07g023990.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq01G0092, Ceq09G1492 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G0068 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno03g07590, gene.Cymno18g05060 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g06720 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.943 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00010591, Pov_00028544 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G14235, Lb4G22286 |
| Poaceae | Echinochloa crus-galli | 8 | AH01.3102, AH01.4873, AH07.3651, BH01.4801, BH07.3461 ... |
| Poaceae | Eleusine coracana subsp. coracana | 6 | gene-QOZ80_2AG0114790, gene-QOZ80_2AG0147640 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_012266, gene-QYE76_070531 |
| Poaceae | Oryza coarctata | 3 | Oco11G008250, Oco12G008280, Oco19G008760 |
| Poaceae | Oryza sativa | 3 | LOC_Os02g53350.1, LOC_Os06g21530.1, LOC_Os10g38910.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_01G304100, gene-BS78_01G469800 ... |
| Poaceae | Sporobolus alterniflorus | 6 | Chr06G000970, Chr06G028940, Chr12G003000, Chr13G021430 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel1E01G330900, Tel4E01G471800, Tel6E01G571800 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC4AG003100, gene_TRIDC4BG048530 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS1A02G185200.1.cds1, TraesCS1B02G193100.1.cds1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb021830_P001, Zm00001eb256490_P001 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-36164, nbis-gene-4395, nbis-gene-47085 ... |
| Poaceae | Zoysia macrostachya | 4 | Zma_g12802, Zma_g15577, Zma_g17254, Zma_g4354 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.2530, evm.TU.LG06.464 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g01850 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_16_RagTag.671, evm.TU.Scaffold_4_RagTag.83 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-24831, nbisL1-mrna-29259 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-19076, nbisL1-mrna-2196 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000008l.14, evm.TU.utg000022l.171 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00000151, Maker00016102 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-17635, nbisL1-mrna-179 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-10433, nbisL1-mrna-6314 |
| Salicaceae | Populus euphratica | 2 | populus_peu03285, populus_peu09810 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132604246, gene-LOC132634045 |
| Solanaceae | Solanum chilense | 2 | SOLCI000319900, SOLCI001952600 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107005463, gene-LOC107013696 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_2255 |
| Tamaricaceae | Tamarix chinensis | 2 | TC06G0228, TC06G2325 |
| Zosteraceae | Zostera marina | 2 | Zosma04g26110.v3.1, Zosma06g02170.v3.1 |