Basic Information
Locus ID:
Sgl01446
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
ribonuclease H protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA1 | 14586268 | 14595163 | + | Sgl01446 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.45 | 154,058.45 Da | 43.96 | 83.10 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01650 | RT_nLTR_like | 610 | 878 | 3.45254E-61 | - |
| CDD | cd16454 | RING-H2_PA-TM-RING | 1307 | 1350 | 2.47206E-18 | - |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 622 | 865 | 1.2E-42 | IPR000477 |
| Pfam | PF13639 | Ring finger domain | 1306 | 1350 | 6.8E-12 | IPR001841 |
| SUPERFAMILY | SSF56219 | DNase I-like | 136 | 350 | 5.1E-28 | IPR036691 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 525 | 959 | 1.56E-23 | IPR043502 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1302 | 1354 | 3.05E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1265 | 1354 | 2.2E-20 | IPR013083 |
| Gene3D | G3DSA:3.60.10.10 | Endonuclease/exonuclease/phosphatase | 125 | 349 | 6.7E-24 | IPR036691 |
| SMART | SM00184 | ring_2 | 1308 | 1349 | 4.3E-7 | IPR001841 |
| ProSiteProfiles | PS50878 | Reverse transcriptase (RT) catalytic domain profile. | 597 | 867 | 16.521744 | IPR000477 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1308 | 1350 | 12.489278 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 31 | - | - |
| Coils | Coil | Coil | 410 | 430 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35910.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_048496559.1 | uncharacterized protein LOC125495778 [Beta vulgaris subsp. vulgaris] | 0 |
| P93295 | Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 GN=AtMg00310 PE=4 SV=1 | 0 | |
| TrEMBL | F4NCJ6 | Reverse transcriptase domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||