Basic Information
Locus ID:
Sgl01440
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Short Name:
GLT1
Description:
glutamate synthase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA1 | 14551746 | 14555857 | + | Sgl01440 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.06 | 114,308.15 Da | 35.00 | 93.17 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02808 | GltS_FMN | 509 | 888 | 2.7511E-176 | IPR002932 |
| Pfam | PF01645 | Conserved region in glutamate synthase | 507 | 876 | 3.6E-153 | IPR002932 |
| Pfam | PF04898 | Glutamate synthase central domain | 152 | 440 | 4.4E-111 | IPR006982 |
| Pfam | PF01493 | GXGXG motif | 959 | 1037 | 3.7E-29 | IPR002489 |
| Pfam | PF00310 | Glutamine amidotransferases class-II | 1 | 92 | 8.2E-46 | IPR017932 |
| SUPERFAMILY | SSF51395 | FMN-linked oxidoreductases | 147 | 912 | 1.92E-252 | - |
| SUPERFAMILY | SSF69336 | Alpha subunit of glutamate synthase, C-terminal domain | 928 | 1033 | 2.49E-31 | IPR036485 |
| SUPERFAMILY | SSF56235 | N-terminal nucleophile aminohydrolases (Ntn hydrolases) | 1 | 92 | 3.86E-34 | IPR029055 |
| Gene3D | G3DSA:3.20.20.70 | Aldolase class I | 127 | 490 | 7.5E-132 | IPR013785 |
| Gene3D | G3DSA:2.160.20.60 | - | 924 | 1041 | 5.4E-35 | IPR036485 |
| Gene3D | G3DSA:3.20.20.70 | Aldolase class I | 491 | 923 | 6.3E-204 | IPR013785 |
| Gene3D | G3DSA:3.60.20.10 | Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 | 1 | 120 | 3.8E-42 | IPR029055 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 600 | 621 | - | - |
| Coils | Coil | Coil | 282 | 302 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
ko00250 (Alanine, aspartate and glutamate metabolism)
map00250 (Alanine, aspartate and glutamate metabolism)
ko00910 (Nitrogen metabolism)
map00910 (Nitrogen metabolism)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01110 (Biosynthesis of secondary metabolites)
map01110 (Biosynthesis of secondary metabolites)
ko01120 (Microbial metabolism in diverse environments)
map01120 (Microbial metabolism in diverse environments)
ko01230 (Biosynthesis of amino acids)
map01230 (Biosynthesis of amino acids)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G53460.1 | NADH-dependent glutamate synthase 1. NADH-dependent glutamate synthase | 0 |
| RefSeq | XP_021843075.1 | glutamate synthase 1 [NADH], chloroplastic isoform X1 [Spinacia oleracea] | 0 |
| Q9LV03 | Glutamate synthase 1 [NADH], chloroplastic OS=Arabidopsis thaliana OX=3702 GN=GLT1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9QQ02 | glutamate synthase (NADH) OS=Spinacia oleracea OX=3562 GN=SOVF_154380 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg13893, jg2196 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_3295 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah018647 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g052140 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg15107, Sbi_jg55939 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg26420 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00020044 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl01374, Sgl01440, Sgl01441, Sgl06449, Sgl06528 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000000510, gene:ENSEOMG00000031859 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0004880, CQ.Regalona.r1.3BG0004920 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30185180 |
| Apiaceae | Apium graveolens | 2 | Ag10G02525, AgUnG00467 |
| Arecaceae | Cocos nucifera | 2 | COCNU_03G013130, scaffold000561G000020 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103708325, gene-LOC103713334 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2833.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G12439 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G53460.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012414m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g15593.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g016600.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1606 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1742 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno02g12650, gene.Cymno12g01560 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0052s00003.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate03g24920, gene.Thate09g14990 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2897 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00041146 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb0G37740, Lb7G32942 |
| Poaceae | Echinochloa crus-galli | 5 | AH02.2769, AH05.1457, BH02.2852, BH05.1626, CH02.3687 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0028780, gene-QOZ80_1BG0079010 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0280530.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_054594, gene-QYE76_054602 |
| Poaceae | Oryza coarctata | 4 | Oco01G017400, Oco02G017650, Oco09G016320, Oco10G016130 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g48960.1, LOC_Os05g48200.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_03G233100, gene-BS78_03G236800 ... |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0602367 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr02G012560, Chr03G013590, Chr08G013750 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G442300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG039670, gene_TRIDC3BG044820 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G266300.1, TraesCS3B02G299800.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb156610_P002, Zm00001eb295220_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-12580, nbis-gene-26118 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g10886, Zma_g8437 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG06.1967 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc08g13790, gene.Posoc09g09130 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.622, evm.TU.Scaffold_2_RagTag.1648 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-3559, nbisL1-mrna-7507 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-2555, nbisL1-mrna-921 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-14013, nbisL1-mrna-5641 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000009l.314, evm.TU.utg000012l.386 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00005974, Maker00011451 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-2744, nbisL1-mrna-8412 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-16769, nbisL1-mrna-743 |
| Salicaceae | Populus euphratica | 3 | populus_peu28067, populus_peu29502, populus_peu29503 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132632063 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107013700 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_5260 |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G1506 |
| Zosteraceae | Zostera marina | 2 | Zosma01g06270.v3.1, Zosma01g22390.v3.1 |