Basic Information
Locus ID:
Sgl01366
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
F-box associated domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA1 | 13843304 | 13845219 | + | Sgl01366 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.76 | 45,714.64 Da | 48.97 | 95.14 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 25 | 60 | 2.2E-8 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 21 | 95 | 9.68E-15 | IPR036047 |
| SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 121 | 262 | 6.93E-5 | IPR011043 |
| Gene3D | G3DSA:1.20.1280.50 | - | 4 | 62 | 6.4E-12 | - |
| SMART | SM00256 | fbox_2 | 26 | 66 | 6.7E-5 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 130 | 348 | 2.0E-17 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 20 | 73 | 10.186324 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021715188.1 | F-box/kelch-repeat protein At3g06240-like [Chenopodium quinoa] | 0 |
| TrEMBL | A0A803LBN3 | F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 11 | gene_16218, gene_16226, gene_2540, gene_2541, gene_2830 ... |
| Amaranthaceae | Atriplex hortensis | 8 | Ah007104, Ah007689, Ah007690, Ah018643, Ah021126, Ah021127 ... |
| Amaranthaceae | Salicornia bigelovii | 6 | Sbi_jg15003, Sbi_jg15004, Sbi_jg15099, Sbi_jg29991 ... |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg26326, Seu_jg28588 |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00020049, GOSA_00020050, GOSA_00020051 |
| Amaranthaceae | Suaeda glauca | 10 | Sgl01365, Sgl01366, Sgl06440, Sgl06519, Sgl06520, Sgl12989 ... |
| Amaranthaceae | Chenopodium album | 7 | gene:ENSEOMG00000000314, gene:ENSEOMG00000003057 ... |
| Amaranthaceae | Chenopodium quinoa | 10 | CQ.Regalona.r1.2AG0015500, CQ.Regalona.r1.2AG0015510 ... |