Basic Information
Locus ID:
Sgl01352
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
F-box protein At5g07610-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA1 | 13771014 | 13772231 | - | Sgl01352 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.32 | 46,362.69 Da | 50.90 | 87.01 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF81383 | F-box domain | 35 | 105 | 2.22E-7 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 20 | 112 | 6.2E-6 | - |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 130 | 302 | 2.3E-16 | IPR017451 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 368 | 405 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 388 | 405 | - | - |
| Coils | Coil | Coil | 6 | 26 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021729085.1 | F-box/kelch-repeat protein At3g23880-like isoform X3 [Chenopodium quinoa] | 0 |
| TrEMBL | A0A803L2L7 | F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_16616 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah018633, Ah018634, Ah034289 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg35729 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg3693, Seu_jg3694 |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00020056, GOSA_00020058, GOSA_00020059 |
| Amaranthaceae | Suaeda glauca | 24 | Sgl01351, Sgl01352, Sgl01353, Sgl01354, Sgl01355, Sgl06434 ... |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000028850, gene:ENSEOMG00000030685 ... |
| Amaranthaceae | Chenopodium quinoa | 9 | CQ.Regalona.r1.2BG0014960, CQ.Regalona.r1.3AG0004980 ... |
| Plantaginaceae | Plantago ovata | 1 | Pov_00023045 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132613212 |