Basic Information
Locus ID:
Sgl01269
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA1 | 13138931 | 13144530 | - | Sgl01269 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.11 | 31,270.51 Da | 49.59 | 52.39 | -0.82 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12420 | RRM_RBPMS_like | 186 | 268 | 3.50169E-38 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 188 | 257 | 3.7E-11 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 122 | 257 | 1.75E-15 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 182 | 272 | 8.8E-20 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 187 | 265 | 4.3E-8 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 186 | 272 | 11.963396 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 41 | 55 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 145 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 16 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 65 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21320.2 | nucleotide binding;nucleic acid binding. | 0 |
| RefSeq | XP_021774992.1 | nuclear speckle RNA-binding protein A-like isoform X1 [Chenopodium quinoa] | 0 |
| Q8H0P8 | RNA-binding protein 1 OS=Medicago truncatula OX=3880 GN=RBP1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9RJL1 | RRM domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_058860 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology