halophFGD

Basic Information

Locus ID: Sgl00785

Species & Taxonomic ID: Suaeda glauca & 397272

Genome Assembly: GWHEQCX00000000

Description: DNA RNA polymerases superfamily protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chrA1	9764927	9767039	+	Sgl00785

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.06	58,830.81 Da	38.30	76.12	-0.48

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF17921	Integrase zinc binding domain	359	413	2.7E-12	IPR041588
Pfam	PF17917	RNase H-like domain found in reverse transcriptase	281	317	4.3E-7	IPR041373
SUPERFAMILY	SSF56672	DNA/RNA polymerases	197	331	5.34E-34	IPR043502
SUPERFAMILY	SSF53098	Ribonuclease H-like	425	512	2.07E-12	IPR012337
Gene3D	G3DSA:1.10.340.70	-	323	413	2.9E-13	-
Gene3D	G3DSA:3.30.70.270	-	217	250	7.0E-10	IPR043128
Gene3D	G3DSA:3.30.420.10	-	423	513	8.5E-11	IPR036397
ProSiteProfiles	PS50994	Integrase catalytic domain profile.	423	513	9.09834	IPR001584
MobiDBLite	mobidb-lite	consensus disorder prediction	144	159	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	137	159	-	-

Gene Ontology

Biological Process:

GO:0015074 (DNA integration)

Molecular Function:

GO:0003676 (nucleic acid binding)

KEGG Pathway

KO Term:

K09250 (cellular nucleic acid-binding protein)

Best hit

Source	Best Hit ID	Description
RefSeq	XP_048491338.1	uncharacterized protein LOC104899555 [Beta vulgaris subsp. vulgaris]
Swiss-Prot	P92523	Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana OX=3702 GN=AtMg00860 PE=4 SV=1
TrEMBL	A0A061DME7	DNA/RNA polymerases superfamily protein OS=Theobroma cacao OX=3641 GN=TCM_003025 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Suaeda glauca	144	Sgl00054, Sgl00059, Sgl00122, Sgl00123, Sgl00785, Sgl03218 ... Sgl03679, Sgl03687, Sgl03723, Sgl03991, Sgl03993, Sgl04037, Sgl04361, Sgl04545, Sgl04569, Sgl04770, Sgl04822, Sgl04824, Sgl04939, Sgl05054, Sgl05127, Sgl05190, Sgl05796, Sgl08539, Sgl08580, Sgl08790, Sgl08798, Sgl08830, Sgl09430, Sgl09591, Sgl09616, Sgl09814, Sgl09873, Sgl10006, Sgl10108, Sgl13177, Sgl13755, Sgl14041, Sgl14184, Sgl18330, Sgl18480, Sgl19162, Sgl19200, Sgl19418, Sgl19458, Sgl19545, Sgl20479, Sgl20541, Sgl20748, Sgl21403, Sgl21838, Sgl22031, Sgl25859, Sgl25920, Sgl26130, Sgl26728, Sgl27312, Sgl30940, Sgl31162, Sgl32072, Sgl32092, Sgl32156, Sgl32313, Sgl32394, Sgl32643, Sgl32876, Sgl32884, Sgl36504, Sgl36546, Sgl37358, Sgl37387, Sgl37610, Sgl37693, Sgl37935, Sgl38147, Sgl43535, Sgl44020, Sgl44110, Sgl44120, Sgl44521, Sgl44576, Sgl44829, Sgl45070, Sgl46105, Sgl47766, Sgl48331, Sgl48789, Sgl48877, Sgl49024, Sgl49287, Sgl49294, Sgl49339, Sgl49591, Sgl49839, Sgl50799, Sgl52998, Sgl53097, Sgl53337, Sgl53592, Sgl53793, Sgl53890, Sgl58273, Sgl58399, Sgl58853, Sgl58868, Sgl59058, Sgl59221, Sgl64584, Sgl65072, Sgl65136, Sgl65556, Sgl69033, Sgl69559, Sgl69651, Sgl69879, Sgl71961, Sgl71964, Sgl72009, Sgl72023, Sgl72113, Sgl72177, Sgl72187, Sgl72319, Sgl74411, Sgl75527, Sgl75571, Sgl75720, Sgl75740, Sgl75751, Sgl77963, Sgl78783, Sgl78923, Sgl79041, Sgl79422, Sgl79476, Sgl79562, Sgl79692, Sgl79825, Sgl81252, Sgl81496, Sgl81889, Sgl81952, Sgl82030, Sgl82151