Basic Information
Locus ID:
Sgl00660
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Ribonuclease H protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA1 | 8636981 | 8641021 | - | Sgl00660 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.38 | 153,607.95 Da | 35.88 | 88.23 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06222 | RNase_H_like | 1218 | 1339 | 1.95304E-13 | IPR044730 |
| CDD | cd01650 | RT_nLTR_like | 486 | 751 | 1.47614E-49 | - |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 491 | 745 | 7.3E-40 | IPR000477 |
| Pfam | PF13456 | Reverse transcriptase-like | 1220 | 1342 | 4.4E-12 | IPR002156 |
| Pfam | PF13966 | zinc-binding in reverse transcriptase | 1017 | 1101 | 7.8E-19 | IPR026960 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 425 | 722 | 3.34E-15 | IPR043502 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 1214 | 1339 | 4.1E-7 | IPR012337 |
| SUPERFAMILY | SSF56219 | DNase I-like | 18 | 220 | 1.05E-14 | IPR036691 |
| Gene3D | G3DSA:3.30.420.10 | - | 1216 | 1344 | 2.5E-9 | IPR036397 |
| Gene3D | G3DSA:3.60.10.10 | Endonuclease/exonuclease/phosphatase | 3 | 220 | 4.5E-16 | IPR036691 |
| ProSiteProfiles | PS50878 | Reverse transcriptase (RT) catalytic domain profile. | 472 | 754 | 13.385397 | IPR000477 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25270.1 | Ribonuclease H-like superfamily protein. | 0 |
| RefSeq | XP_021854772.1 | uncharacterized protein LOC110794134 [Spinacia oleracea] | 0 |
| P11369 | LINE-1 retrotransposable element ORF2 protein OS=Mus musculus OX=10090 GN=Pol PE=1 SV=2 | 0 | |
| TrEMBL | F4NCH8 | Reverse transcriptase domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00010071, GOSA_00015070 |
| Amaranthaceae | Suaeda glauca | 45 | Sgl00660, Sgl00734, Sgl02856, Sgl04536, Sgl05678, Sgl09582 ... |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000022031 |