Basic Information
Locus ID:
Sgl00283
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
WD repeat and HMG-box DNA-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA1 | 4247044 | 4249622 | + | Sgl00283 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.17 | 44,633.16 Da | 46.06 | 77.78 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12341 | Minichromosome loss protein, Mcl1, middle region | 219 | 314 | 2.6E-26 | IPR022100 |
| Pfam | PF00400 | WD domain, G-beta repeat | 31 | 61 | 3.8E-6 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 10 | 102 | 7.23E-16 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 4 | 187 | 2.4E-16 | IPR015943 |
| SMART | SM00320 | WD40_4 | 21 | 61 | 2.3E-7 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 29 | 63 | 11.181047 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 29 | 63 | 13.482671 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 48 | 62 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G42660.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_021855285.1 | WD repeat and HMG-box DNA-binding protein 1 [Spinacia oleracea] | 0 |
| F4JF14 | Protein ENHANCER OF LHP1 1 OS=Arabidopsis thaliana OX=3702 GN=EOL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RMM5 | WD_REPEATS_REGION domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_049190 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||