Basic Information
Locus ID:
Seu_jg9610
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
Shikimate kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000006l | 14147264 | 14153676 | + | Seu_jg9610 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.93 | 32,670.53 Da | 33.90 | 81.82 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01202 | Shikimate kinase | 108 | 258 | 7.6E-24 | IPR031322 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 100 | 227 | 8.81E-11 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 83 | 295 | 3.3E-50 | IPR027417 |
| PRINTS | PR01100 | Shikimate kinase family signature | 154 | 162 | 1.2E-13 | - |
| PRINTS | PR01100 | Shikimate kinase family signature | 192 | 209 | 1.2E-13 | - |
| PRINTS | PR01100 | Shikimate kinase family signature | 172 | 181 | 1.2E-13 | - |
| PRINTS | PR01100 | Shikimate kinase family signature | 125 | 138 | 1.2E-13 | - |
| PRINTS | PR01100 | Shikimate kinase family signature | 101 | 116 | 1.2E-13 | - |
| Hamap | MF_00109 | Shikimate kinase [aroK]. | 98 | 281 | 16.041843 | IPR000623 |
KEGG Pathway
Pathway:
ko00400 (Phenylalanine, tyrosine and tryptophan biosynthesis)
map00400 (Phenylalanine, tyrosine and tryptophan biosynthesis)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01110 (Biosynthesis of secondary metabolites)
map01110 (Biosynthesis of secondary metabolites)
ko01230 (Biosynthesis of amino acids)
map01230 (Biosynthesis of amino acids)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26900.1 | shikimate kinase like 1. | 0 |
| RefSeq | XP_021864333.1 | probable inactive shikimate kinase like 1, chloroplastic isoform X1 [Spinacia oleracea] | 0 |
| Q9LW20 | Probable inactive shikimate kinase like 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SKL1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QLN1 | Inactive shikimate kinase like 1, chloroplastic OS=Spinacia oleracea OX=3562 GN=SOVF_165080 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg40501 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_25023 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah026889 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g130930 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg13667, Sbi_jg52235 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9610 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017636 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl33456, Sgl38823 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000003438, gene:ENSEOMG00000005729 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.6BG0021450 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30025200 |
| Apiaceae | Apium graveolens | 1 | Ag7G01334 |
| Arecaceae | Cocos nucifera | 1 | COCNU_15G005480 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103708087 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_09.1444.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G11351 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G26900.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10004751m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g16020.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g067100.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G0070 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G0076 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g01830 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g05820 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.93 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00025028 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G22369 |
| Poaceae | Echinochloa crus-galli | 4 | AH05.3781, BH05.3836, BH06.1197, CH05.4048 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0637310, gene-QOZ80_8BG0665840 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0231940.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_063988 |
| Poaceae | Oryza coarctata | 2 | Oco01G000120, Oco02G000160 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g01302.1 |
| Poaceae | Paspalum vaginatum | 4 | gene-BS78_01G233000, gene-BS78_05G042500 ... |
| Poaceae | Puccinellia tenuiflora | 5 | Pt_Chr0104076, Pt_Chr0300618, Pt_Chr0300655, Pt_Chr0300676 ... |
| Poaceae | Sporobolus alterniflorus | 2 | Chr19G008920, Chr27G007580 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G148600 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC3AG009900, gene_TRIDC3BG013620 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G082700.1, TraesCS3B02G097800.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb028930_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-50077 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g25212 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.2312, evm.TU.LG17.1362 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g04020 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.60369.1, evm.TU.60370.1 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-14196 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-14337 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000005l.228 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00010038 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-370 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-18987 |
| Salicaceae | Populus euphratica | 2 | populus_peu16364, populus_peu38316 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132622505 |
| Solanaceae | Solanum chilense | 1 | SOLCI000002300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107011013 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.13953_chr05_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G3419 |
| Zosteraceae | Zostera marina | 1 | Zosma01g41310.v3.1 |