Basic Information
Locus ID:
Seu_jg9604
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000006l | 14068380 | 14083220 | + | Seu_jg9604 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.56 | 104,939.29 Da | 38.09 | 83.83 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 655 | 768 | 3.4E-20 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 624 | 860 | 4.49E-46 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 727 | 769 | 3.1E-6 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 610 | 726 | 7.5E-32 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 770 | 884 | 6.4E-17 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 650 | 940 | 17.502851 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 656 | 680 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 910 | 940 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 610 | 630 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26950.1 | 0 | |
| RefSeq | XP_021835457.1 | uncharacterized protein LOC110775161 [Spinacia oleracea] | 0 |
| Q9FE20 | Serine/threonine-protein kinase PBS1 OS=Arabidopsis thaliana OX=3702 GN=PBS1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6QWZ5 | Protein kinase domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_007197 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg40495 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_25015 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah026896 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g131000 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg13659, Sbi_jg52242 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9604 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017630 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl33448, Sgl38815 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000000201, gene:ENSEOMG00000004012 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0020440, CQ.Regalona.r1.6BG0021520 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30025130 |
| Apiaceae | Apium graveolens | 2 | Ag10G01107, Ag6G01501 |
| Arecaceae | Cocos nucifera | 1 | COCNU_15G005340 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103708101 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_09.1426.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G07882 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G26950.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10003939m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g16080.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g067150.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G0077 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G0083 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g09630 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g12780, gene.Thate06g08920 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2316 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.100 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G22711, Lb7G35080 |
| Poaceae | Echinochloa crus-galli | 3 | AH04.1362, BH04.1363, CH04.1543 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_9BG0708020 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0731490.1 |
| Poaceae | Oryza coarctata | 2 | Oco21G006080, Oco22G007140 |
| Poaceae | Oryza sativa | 1 | LOC_Os11g31110.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_05G148600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0703778, Pt_Chr0703783 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr07G017350, Chr31G005460 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G750100 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC7BG055110 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G445400.1, TraesCS7B02G344900.1 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-50258 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g18869 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.2681, evm.TU.LG08.307 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g16960 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_11_RagTag.808 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-14481 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-3672 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-12411 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000061l.73 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00009100 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-881 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-8470 |
| Salicaceae | Populus euphratica | 1 | populus_peu01281 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132622612 |
| Solanaceae | Solanum chilense | 1 | SOLCI004270400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107009210 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_13592 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G3434 |
| Zosteraceae | Zostera marina | 1 | Zosma05g01420.v3.1 |