Basic Information
Locus ID:
Seu_jg9462
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
Leucine-rich repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000006l | 12095030 | 12096292 | - | Seu_jg9462 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.63 | 44,933.83 Da | 46.15 | 112.14 | 0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 31 | 71 | 7.8E-7 | IPR013210 |
| Pfam | PF00560 | Leucine Rich Repeat | 133 | 153 | 0.19 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 37 | 321 | 1.02E-38 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 30 | 202 | 1.0E-35 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 203 | 398 | 2.2E-31 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 180 | 203 | 33.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 155 | 179 | 41.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 250 | 274 | 34.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 131 | 154 | 63.0 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 133 | 155 | 7.750458 | IPR001611 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G17640.1 | Leucine-rich repeat (LRR) family protein. | 0 |
| RefSeq | XP_021859954.1 | DNA damage-repair/toleration protein DRT100 [Spinacia oleracea] | 0 |
| TrEMBL | A0A0K9S068 | LRRNT_2 domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_014320 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology