Basic Information
Locus ID:
Seu_jg9296
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
ubiquitin-conjugating enzyme
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000006l | 9899350 | 9901596 | - | Seu_jg9296 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.03 | 17,459.35 Da | 67.17 | 69.37 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 14 | 152 | 2.8754E-61 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 14 | 151 | 1.5E-48 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 3 | 156 | 5.38E-59 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 6 | 158 | 5.3E-60 | IPR016135 |
| SMART | SM00212 | ubc_7 | 13 | 157 | 4.0E-60 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 10 | 157 | 52.670418 | IPR000608 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G02760.1 | ubiquiting-conjugating enzyme 2. ubiquitin conjugating enzyme UBC2. Homolog of the yeast RAD6 gene. | 0 |
| RefSeq | XP_021852071.1 | ubiquitin-conjugating enzyme E2 2-like [Spinacia oleracea] | 0 |
| P35130 | Ubiquitin-conjugating enzyme E2 2 OS=Medicago sativa OX=3879 GN=UBC2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9RXZ1 | UBC core domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_015420 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_16942 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah026529 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g137300 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg13306, Sbi_jg52542 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9296 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl34475, Sgl39889 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000003605, gene:ENSEOMG00000005805 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0017550, CQ.Regalona.r1.6BG0018710 |
| Arecaceae | Cocos nucifera | 1 | contig69538645G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103704264 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0299s00007.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g31230 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb8G36405 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.951, evm.TU.LG15.865 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g20020, gene.Posoc03g27170 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-804 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14932 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-2421 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.538 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00001622 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6175 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1862 |